DMR 25022 chr1:14057451-14057650 (200bp)

DMR Stats
Positionchr1:14057451-14057650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesPRDM2 (0bp away)
ANODEV p-value2.87697924346e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25022 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25022 PRDM2 265 uc001avh.3 chr1 14031350 14114574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25022 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25022 chr1 14057330 14057765 wgEncodeRegTfbsClusteredV3 MXI1 score:899, expCount:1, expNums:298, expScores:899, srow:35563
25022 chr1 14057331 14057620 wgEncodeRegTfbsClusteredV3 MEF2A score:215, expCount:1, expNums:93, expScores:215, srow:35564
25022 chr1 14057339 14057774 wgEncodeRegTfbsClusteredV3 MAX score:593, expCount:2, expNums:223,296, expScores:506,593, srow:35565
25022 chr1 14057340 14057862 wgEncodeRegTfbsClusteredV3 TAF1 score:342, expCount:3, expNums:115,127,132, expScores:342,208,235, srow:35566
25022 chr1 14057340 14057935 wgEncodeRegTfbsClusteredV3 ZNF263 score:587, expCount:2, expNums:368,553, expScores:587,144, srow:35567
25022 chr1 14057373 14057736 wgEncodeRegTfbsClusteredV3 ELK1 score:472, expCount:1, expNums:293, expScores:472, srow:35568
25022 chr1 14057380 14057799 wgEncodeRegTfbsClusteredV3 BCLAF1 score:228, expCount:1, expNums:84, expScores:228, srow:35569
25022 chr1 14057381 14057644 wgEncodeRegTfbsClusteredV3 RAD21 score:176, expCount:2, expNums:108,310, expScores:176,163, srow:35570
25022 chr1 14057385 14057708 wgEncodeRegTfbsClusteredV3 E2F6 score:188, expCount:1, expNums:215, expScores:188, srow:35571
25022 chr1 14057388 14057717 wgEncodeRegTfbsClusteredV3 BHLHE40 score:380, expCount:1, expNums:284, expScores:380, srow:35572
25022 chr1 14057412 14057727 wgEncodeRegTfbsClusteredV3 GABPA score:1000, expCount:3, expNums:91,180,220, expScores:1000,189,875, srow:35573
25022 chr1 14057418 14057693 wgEncodeRegTfbsClusteredV3 USF2 score:451, expCount:1, expNums:319, expScores:451, srow:35574
25022 chr1 14057426 14057805 wgEncodeRegTfbsClusteredV3 NFYB score:228, expCount:1, expNums:302, expScores:228, srow:35575
25022 chr1 14057434 14057763 wgEncodeRegTfbsClusteredV3 IRF4 score:389, expCount:1, expNums:92, expScores:389, srow:35576
25022 chr1 14057436 14057691 wgEncodeRegTfbsClusteredV3 ELF1 score:799, expCount:1, expNums:88, expScores:799, srow:35577
25022 chr1 14057436 14057699 wgEncodeRegTfbsClusteredV3 EBF1 score:260, expCount:1, expNums:86, expScores:260, srow:35578
25022 chr1 14057438 14057707 wgEncodeRegTfbsClusteredV3 USF1 score:387, expCount:1, expNums:118, expScores:387, srow:35579
25022 chr1 14057454 14057687 wgEncodeRegTfbsClusteredV3 SPI1 score:1000, expCount:3, expNums:107,126,230, expScores:1000,1000,160, srow:35580
25022 chr1 14057463 14057659 wgEncodeRegTfbsClusteredV3 SRF score:1000, expCount:1, expNums:113, expScores:1000, srow:35581
25022 chr1 14057499 14057722 wgEncodeRegTfbsClusteredV3 ETS1 score:104, expCount:1, expNums:89, expScores:104, srow:35582
25022 chr1 14057514 14057817 wgEncodeRegTfbsClusteredV3 TCF3 score:212, expCount:1, expNums:117, expScores:212, srow:35583
25022 chr1 14057523 14057686 wgEncodeRegTfbsClusteredV3 SP1 score:390, expCount:1, expNums:112, expScores:390, srow:35584
25022 chr1 14057595 14057700 wgEncodeRegTfbsClusteredV3 TCF12 score:439, expCount:1, expNums:116, expScores:439, srow:35585
25022 chr1 14057539 14057558 tfbsConsSites V$MYCMAX_03 score:779, zScore:1.68, srow:29220
25022 chr1 14057543 14057554 tfbsConsSites V$MYCMAX_02 score:901, zScore:2.12, srow:29221

Omics Overlaps

Dmrid Omic Set Data Plot
25022 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 0
25022 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25022 tcgameth site:cg06604289, B=0.36, L=0.66, H=0.61
25022 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25022 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25022 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305