DMR 25047 chr1:16482651-16482900 (250bp)

DMR Stats
Positionchr1:16482651-16482900 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesEPHA2 (68bp away)
ANODEV p-value0.00166347572635
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25047 chr1 16482461 16482800 wgEncodeRegTfbsClusteredV3 HDAC2 score:168, expCount:1, expNums:181, expScores:168, srow:42423
25047 chr1 16482461 16482720 wgEncodeRegTfbsClusteredV3 FOSL2 score:335, expCount:1, expNums:176, expScores:335, srow:42424
25047 chr1 16482461 16482839 wgEncodeRegTfbsClusteredV3 SP1 score:166, expCount:2, expNums:153,196, expScores:166,165, srow:42425
25047 chr1 16482463 16482978 wgEncodeRegTfbsClusteredV3 TFAP2C score:755, expCount:1, expNums:370, expScores:755, srow:42426
25047 chr1 16482465 16482994 wgEncodeRegTfbsClusteredV3 TFAP2A score:278, expCount:1, expNums:369, expScores:278, srow:42427
25047 chr1 16482475 16482790 wgEncodeRegTfbsClusteredV3 BRCA1 score:719, expCount:2, expNums:374,424, expScores:719,158, srow:42428
25047 chr1 16482486 16482749 wgEncodeRegTfbsClusteredV3 CEBPB score:241, expCount:1, expNums:378, expScores:241, srow:42429
25047 chr1 16482530 16482749 wgEncodeRegTfbsClusteredV3 ZBTB7A score:153, expCount:1, expNums:205, expScores:153, srow:42430
25047 chr1 16482531 16482790 wgEncodeRegTfbsClusteredV3 SMC3 score:190, expCount:1, expNums:408, expScores:190, srow:42431
25047 chr1 16482639 16482653 tfbsConsSites V$TATA_01 score:906, zScore:2.49, srow:34060
25047 chr1 16482621 16482653 phastConsElements100way lod=191 score:513, srow:62442
25047 chr1 16482677 16482684 phastConsElements100way lod=15 score:262, srow:62443
25047 chr1 16481485 16482782 cpgIsland CpG: 118 length:1298, cpgNum:118, gcNum:892, perCpg:18.2, perGc:68.7, obsExp:0.77, srow:496
25047 chr1 16482783 16484782 cpgShore — values(x.gr)[overs$srow, ]:857

Omics Overlaps

Dmrid Omic Set Data Plot
25047 cellmeth_recounts PrEC: 0, LNCaP: 15, DU145: 0
25047 cellmeth_diffreps_PrECvsLNCaP A=0, B=12, Length=280, Event=Up, log2FC=Inf, padj=0.00157949948552458
25047 cellmeth_diffreps_LNCaPvsDU145 A=12.83, B=0, Length=280, Event=Down, log2FC=-Inf, padj=0.00293113488474198
25047 cellexp id=ENSG00000227959, name=RP11-276H7.2, PrEC=46, str=37, LNCaP=5, str=3, DU145=34, str=44
25047 tcgameth site:cg09178261, B=0.27, L=0.51, H=0.44
25047 tcgameth site:cg15146752, B=0.36, L=0.67, H=0.62
25047 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25047 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305