DMR 25056 chr1:16973901-16975000 (1100bp)
| DMR Stats | |
|---|---|
| Position | chr1:16973901-16975000 (View on UCSC) |
| Width | 1100bp |
| Genomic Context | promoter |
| Nearest Genes | MST1P2 (0bp away) |
| ANODEV p-value | 1.73829764596e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25056 | MST1P2 | 311 | uc001azk.2 | chr1 | 16972864 | 16975287 | + | 1100 | 100.0 | 0.87 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5.18), E5 (10.82), I5 (18.45), E6 (65.64), I6 (0), E7 (0) | 64.82 |
| 25056 | MST1P2 | 311 | uc001azm.4 | chr1 | 16973908 | 16976915 | + | 1093 | 99.36 | 1.88 | 1 | 46.09 | E1 (15.36), I1 (18.45), E2 (65.64), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc009vow.2 | chr1 | 16972069 | 16974587 | + | 687 | 62.45 | 1.88 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
| 25056 | MST1P2 | 311 | uc009vox.3 | chr1 | 16973908 | 16976915 | + | 1093 | 99.36 | 3.14 | 1 | 46.09 | E1 (15.36), I1 (18.45), E2 (65.64), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc010ocg.1 | chr1 | 16972069 | 16974587 | + | 687 | 62.45 | 34.48 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
| 25056 | MST1P2 | 311 | uc010och.2 | chr1 | 16972069 | 16976915 | + | 1100 | 100.0 | 100.0 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (5.18), E6 (10.82), I6 (18.45), E7 (65.64), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc010oci.1 | chr1 | 16972864 | 16974587 | + | 687 | 62.45 | 11.56 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25056 | chr1 | 16974832 | 16974872 | phastConsElements100way | lod=168 | score:501, srow:64437 |
| 25056 | chr1 | 16974877 | 16974901 | phastConsElements100way | lod=79 | score:426, srow:64438 |
| 25056 | chr1 | 16973486 | 16975045 | cpgIsland | CpG: 133 | length:1560, cpgNum:133, gcNum:1041, perCpg:17.1, perGc:66.7, obsExp:0.77, srow:513 |
- Previous
- Page 2 of 2
- 3 of 28 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25056 | cellmeth_recounts | PrEC: 33, LNCaP: 30, DU145: 17 |  |
| 25056 | cellmeth_diffreps_PrECvsLNCaP | A=75, B=13, Length=460, Event=Down, log2FC=-2.53, padj=3.29301742921649e-10 |  |
| 25056 | cellmeth_diffreps_PrECvsDU145 | A=89, B=4, Length=880, Event=Down, log2FC=-4.48, padj=0 |  |
| 25056 | cellexp | id=ENSG00000186301, name=MST1P2, PrEC=104, str=142, LNCaP=168, str=49, DU145=140, str=139 |  |
| 25056 | tcgameth | site:cg06599927, B=0.3, L=0.42, H=0.42 |  |
| 25056 | tcgameth | site:cg14237550, B=0.32, L=0.48, H=0.47 |  |
| 25056 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25056 | tcgaexp | gene=MST1P2, entrez=11209, pos=chr1:16972069-16976915(+), B=115, L=85, M=87, H=114 |  |
| 25056 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |