DMR 25124 chr1:22140751-22141350 (600bp)

DMR Stats
Positionchr1:22140751-22141350 (View on UCSC)
Width600bp
Genomic Contextexon
Nearest GenesLDLRAD2 (0bp away)
ANODEV p-value2.25382051771e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25124 LDLRAD2 396 uc001bfg.1 chr1 22138758 22151714 + 600 100.0 1.28 0 0.0 E1 (0), I1 (23.33), E2 (71), I2 (5.83), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25124 chr1 22141252 22141270 tfbsConsSites V$PAX2_01 score:779, zScore:1.89, srow:44935
25124 chr1 22141264 22141278 tfbsConsSites V$TAXCREB_01 score:811, zScore:2.3, srow:44936
25124 chr1 22141267 22141284 tfbsConsSites V$CMYB_01 score:820, zScore:2.24, srow:44937
25124 chr1 22141269 22141290 tfbsConsSites V$OLF1_01 score:792, zScore:1.64, srow:44938
25124 chr1 22141286 22141308 tfbsConsSites V$PPARG_02 score:685, zScore:1.73, srow:44939
25124 chr1 22141291 22141304 tfbsConsSites V$ATF_01 score:851, zScore:2.15, srow:44940
25124 chr1 22141292 22141303 tfbsConsSites V$CREBP1_Q2 score:871, zScore:2.23, srow:44941
25124 chr1 22141292 22141303 tfbsConsSites V$CREB_Q4 score:866, zScore:1.82, srow:44942
25124 chr1 22141293 22141303 tfbsConsSites V$AP1FJ_Q2 score:921, zScore:1.96, srow:44943
25124 chr1 22141302 22141322 tfbsConsSites V$PAX6_01 score:781, zScore:2.21, srow:44944
25124 chr1 22140931 22140931 cosmic COSM904205 srow:13265
25124 chr1 22140944 22140944 cosmic COSM1213247 srow:13266
25124 chr1 22140972 22140972 cosmic COSM338653 srow:13267
25124 chr1 22141020 22141020 cosmic COSM904206 srow:13268
25124 chr1 22141030 22141030 cosmic COSM425365 srow:13269
25124 chr1 22141079 22141079 cosmic COSM1339038 srow:13270
25124 chr1 22141121 22141121 cosmic COSM532853 srow:13271
25124 chr1 22141206 22141206 cosmic COSM425366 srow:13272
25124 chr1 22141247 22141247 cosmic COSM1213248 srow:13273
25124 chr1 22141309 22141309 cosmic COSM1295892 srow:13274
25124 chr1 22140888 22140912 phastConsElements100way lod=186 score:511, srow:84320
25124 chr1 22140914 22140948 phastConsElements100way lod=152 score:491, srow:84321
25124 chr1 22140950 22140952 phastConsElements100way lod=27 score:320, srow:84322
25124 chr1 22140956 22140957 phastConsElements100way lod=14 score:255, srow:84323
25124 chr1 22140959 22140960 phastConsElements100way lod=20 score:290, srow:84324

Omics Overlaps

Dmrid Omic Set Data Plot
25124 cellmeth_recounts PrEC: 22, LNCaP: 53, DU145: 10
25124 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=480, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
25124 cellmeth_diffreps_PrECvsLNCaP A=37, B=7, Length=280, Event=Down, log2FC=-2.4, padj=0.000105030392384157
25124 cellmeth_diffreps_PrECvsDU145 A=39, B=2, Length=400, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08
25124 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00547907730955432
25124 cellexp id=ENSG00000187942, name=LDLRAD2, PrEC=11, str=34, LNCaP=0, str=1, DU145=66, str=33
25124 tcgameth site:cg13403586, B=0.06, L=0.35, H=0.32
25124 tcgameth site:cg15467646, B=0.06, L=0.47, H=0.43
25124 tcgameth site:cg17456100, B=0.04, L=0.28, H=0.26
25124 tcgameth site:cg24334174, B=0.87, L=0.92, H=0.91
25124 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25124 tcgaexp gene=LDLRAD2, entrez=401944, pos=chr1:22138758-22151714(+), B=490, L=915, M=505, H=384
25124 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305