DMR 25162 chr1:26527701-26527950 (250bp)

DMR Stats
Positionchr1:26527701-26527950 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesCATSPER4 (0bp away)
ANODEV p-value4.06157805448e-06
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25162 CATSPER4 478 uc009vsf.3 chr1 26517119 26529033 + 250 100.0 0.18 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
25162 CATSPER4 478 uc010oey.1 chr1 26517119 26528094 + 250 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (57.6), E8 (42.4) 100.0
25162 CATSPER4 478 uc010oez.2 chr1 26517119 26529033 + 250 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25162 chr1 26527659 26527958 wgEncodeRegTfbsClusteredV3 SP1 score:166, expCount:1, expNums:234, expScores:166, srow:72990
25162 chr1 26527660 26528015 wgEncodeRegTfbsClusteredV3 RCOR1 score:424, expCount:2, expNums:491,492, expScores:202,424, srow:72991
25162 chr1 26527662 26528061 wgEncodeRegTfbsClusteredV3 NR2F2 score:436, expCount:1, expNums:225, expScores:436, srow:72992
25162 chr1 26527666 26528101 wgEncodeRegTfbsClusteredV3 UBTF score:170, expCount:1, expNums:549, expScores:170, srow:72993
25162 chr1 26527671 26527915 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:1, expNums:240, expScores:1000, srow:72994
25162 chr1 26527683 26528006 wgEncodeRegTfbsClusteredV3 NFYA score:113, expCount:1, expNums:516, expScores:113, srow:72995
25162 chr1 26527700 26528099 wgEncodeRegTfbsClusteredV3 TAF1 score:174, expCount:1, expNums:238, expScores:174, srow:72996
25162 chr1 26527701 26527954 wgEncodeRegTfbsClusteredV3 RAD21 score:331, expCount:3, expNums:149,231,355, expScores:277,331,173, srow:72997
25162 chr1 26527703 26527906 wgEncodeRegTfbsClusteredV3 SPI1 score:176, expCount:1, expNums:230, expScores:176, srow:72998
25162 chr1 26527705 26527940 wgEncodeRegTfbsClusteredV3 HDAC2 score:142, expCount:1, expNums:222, expScores:142, srow:72999
25162 chr1 26527707 26528022 wgEncodeRegTfbsClusteredV3 EP300 score:421, expCount:1, expNums:519, expScores:421, srow:73000
25162 chr1 26527717 26528006 wgEncodeRegTfbsClusteredV3 ZNF143 score:182, expCount:1, expNums:552, expScores:182, srow:73001
25162 chr1 26527723 26528055 wgEncodeRegTfbsClusteredV3 E2F6 score:910, expCount:2, expNums:215,495, expScores:807,910, srow:73002
25162 chr1 26527728 26528037 wgEncodeRegTfbsClusteredV3 GABPA score:304, expCount:1, expNums:220, expScores:304, srow:73003
25162 chr1 26527730 26528005 wgEncodeRegTfbsClusteredV3 TAL1 score:147, expCount:1, expNums:542, expScores:147, srow:73004
25162 chr1 26527737 26528131 wgEncodeRegTfbsClusteredV3 JUN score:193, expCount:4, expNums:480,481,482,483, expScores:140,98,193,171, srow:73005
25162 chr1 26527748 26528007 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:126, expCount:1, expNums:232, expScores:126, srow:73006
25162 chr1 26527756 26528075 wgEncodeRegTfbsClusteredV3 NFYB score:163, expCount:1, expNums:517, expScores:163, srow:73007
25162 chr1 26527774 26528109 wgEncodeRegTfbsClusteredV3 E2F4 score:194, expCount:1, expNums:494, expScores:194, srow:73008
25162 chr1 26527779 26527891 wgEncodeRegTfbsClusteredV3 MAZ score:572, expCount:1, expNums:512, expScores:572, srow:73009
25162 chr1 26527797 26528120 wgEncodeRegTfbsClusteredV3 CEBPB score:689, expCount:3, expNums:212,462,477, expScores:491,260,689, srow:73010
25162 chr1 26527800 26528055 wgEncodeRegTfbsClusteredV3 ATF1 score:633, expCount:1, expNums:468, expScores:633, srow:73011
25162 chr1 26527813 26528048 wgEncodeRegTfbsClusteredV3 ATF3 score:239, expCount:1, expNums:208, expScores:239, srow:73012
25162 chr1 26527814 26528040 wgEncodeRegTfbsClusteredV3 JUND score:936, expCount:2, expNums:507,594, expScores:911,936, srow:73013
25162 chr1 26527911 26528150 wgEncodeRegTfbsClusteredV3 SP2 score:115, expCount:1, expNums:235, expScores:115, srow:73014

Omics Overlaps

Dmrid Omic Set Data Plot
25162 cellmeth_recounts PrEC: 18, LNCaP: 1, DU145: 10
25162 cellmeth_diffreps_PrECvsLNCaP A=26, B=1, Length=380, Event=Down, log2FC=-4.7, padj=4.5123884431573e-06
25162 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=200, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25162 cellexp id=ENSG00000188782, name=CATSPER4, PrEC=0, str=0, LNCaP=2, str=1, DU145=1, str=0
25162 tcgaexp gene=CATSPER4, entrez=378807, pos=chr1:26517119-26529033(+), B=0, L=0, M=0, H=0
25162 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305