DMR 25199 chr1:32409801-32410800 (1000bp)

DMR Stats
Positionchr1:32409801-32410800 (View on UCSC)
Width1000bp
Genomic Contextintergenic
Nearest GenesPTP4A2 (5812bp away)
ANODEV p-value4.11807130212e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25199 chr1 32409893 32410332 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:333, expCount:3, expNums:232,250,253, expScores:333,145,110, srow:93678
25199 chr1 32409895 32410430 wgEncodeRegTfbsClusteredV3 SIN3A score:257, expCount:2, expNums:312,357, expScores:257,229, srow:93679
25199 chr1 32409896 32410354 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:514, expCount:3, expNums:316,543,544, expScores:302,223,514, srow:93680
25199 chr1 32409897 32410408 wgEncodeRegTfbsClusteredV3 RCOR1 score:666, expCount:3, expNums:383,491,492, expScores:284,345,666, srow:93681
25199 chr1 32409901 32410382 wgEncodeRegTfbsClusteredV3 MXI1 score:328, expCount:3, expNums:298,397,513, expScores:328,174,182, srow:93682
25199 chr1 32409905 32410340 wgEncodeRegTfbsClusteredV3 MAZ score:1000, expCount:3, expNums:297,396,512, expScores:798,600,1000, srow:93683
25199 chr1 32409906 32410501 wgEncodeRegTfbsClusteredV3 NFIC score:253, expCount:1, expNums:97, expScores:253, srow:93684
25199 chr1 32409917 32410339 wgEncodeRegTfbsClusteredV3 EP300 score:715, expCount:4, expNums:60,145,304,519, expScores:574,186,164,715, srow:93685
25199 chr1 32409917 32410402 wgEncodeRegTfbsClusteredV3 IRF1 score:341, expCount:3, expNums:504,505,506, expScores:239,341,254, srow:93686
25199 chr1 32409918 32410273 wgEncodeRegTfbsClusteredV3 YY1 score:404, expCount:3, expNums:119,244,245, expScores:404,136,326, srow:93687
25199 chr1 32409918 32410320 wgEncodeRegTfbsClusteredV3 BHLHE40 score:261, expCount:2, expNums:284,472, expScores:261,199, srow:93688
25199 chr1 32409920 32410229 wgEncodeRegTfbsClusteredV3 GABPA score:283, expCount:2, expNums:166,220, expScores:163,283, srow:93689
25199 chr1 32409920 32410206 wgEncodeRegTfbsClusteredV3 SPI1 score:217, expCount:3, expNums:107,126,230, expScores:174,192,217, srow:93690
25199 chr1 32409921 32410323 wgEncodeRegTfbsClusteredV3 ELK1 score:310, expCount:3, expNums:293,387,496, expScores:308,309,310, srow:93691
25199 chr1 32409922 32410191 wgEncodeRegTfbsClusteredV3 USF1 score:161, expCount:1, expNums:67, expScores:161, srow:93692
25199 chr1 32409925 32410140 wgEncodeRegTfbsClusteredV3 MEF2A score:130, expCount:1, expNums:224, expScores:130, srow:93693
25199 chr1 32409928 32410177 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:2, expNums:160,240, expScores:297,1000, srow:93694
25199 chr1 32409930 32410253 wgEncodeRegTfbsClusteredV3 CEBPB score:302, expCount:2, expNums:212,378, expScores:201,302, srow:93695
25199 chr1 32409931 32410286 wgEncodeRegTfbsClusteredV3 STAT2 score:148, expCount:1, expNums:540, expScores:148, srow:93696
25199 chr1 32409937 32410542 wgEncodeRegTfbsClusteredV3 GATA1 score:669, expCount:1, expNums:582, expScores:308, srow:93697
25199 chr1 32409943 32410472 wgEncodeRegTfbsClusteredV3 TFAP2A score:135, expCount:1, expNums:369, expScores:135, srow:93698
25199 chr1 32409944 32410452 wgEncodeRegTfbsClusteredV3 ZBTB7A score:838, expCount:1, expNums:247, expScores:838, srow:93699
25199 chr1 32409947 32410462 wgEncodeRegTfbsClusteredV3 TFAP2C score:237, expCount:1, expNums:370, expScores:237, srow:93700
25199 chr1 32409951 32410775 wgEncodeRegTfbsClusteredV3 MYC score:341, expCount:6, expNums:487,488,489,575,617,620, expScores:341,233,213,158,109,194, srow:93701
25199 chr1 32409952 32410448 wgEncodeRegTfbsClusteredV3 UBTF score:212, expCount:2, expNums:548,549, expScores:157,212, srow:93702

Omics Overlaps

Dmrid Omic Set Data Plot
25199 cellmeth_recounts PrEC: 33, LNCaP: 271, DU145: 4
25199 cellmeth_diffreps_PrECvsLNCaP A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0
25199 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
25199 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337
25199 cellmeth_diffreps_PrECvsDU145 A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937
25199 cellmeth_diffreps_LNCaPvsDU145 A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0
25199 cellexp id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046
25199 tcgameth site:cg00925616, B=0.32, L=0.65, H=0.64
25199 tcgameth site:cg04881103, B=0.23, L=0.53, H=0.48
25199 tcgameth site:cg11756095, B=0.25, L=0.63, H=0.6
25199 tcgameth site:cg17942618, B=0.7, L=0.74, H=0.73
25199 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305