DMR 25204 chr1:32829351-32829500 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:32829351-32829500 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | TSSK3 (0bp away) |
| ANODEV p-value | 0.0199178821258 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25204 | TSSK3 | 593 | uc001bvf.3 | chr1 | 32827862 | 32829924 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25204 | chr1 | 32829444 | 32829454 | phastConsElements100way | lod=125 | score:471, srow:134199 |
| 25204 | chr1 | 32829456 | 32829457 | phastConsElements100way | lod=35 | score:345, srow:134200 |
| 25204 | chr1 | 32829459 | 32829460 | phastConsElements100way | lod=21 | score:295, srow:134201 |
| 25204 | chr1 | 32829462 | 32829466 | phastConsElements100way | lod=84 | score:432, srow:134202 |
| 25204 | chr1 | 32829472 | 32829475 | phastConsElements100way | lod=27 | score:320, srow:134203 |
| 25204 | chr1 | 32829480 | 32829481 | phastConsElements100way | lod=21 | score:295, srow:134204 |
| 25204 | chr1 | 32829492 | 32829499 | phastConsElements100way | lod=49 | score:379, srow:134205 |
| 25204 | chr1 | 32828018 | 32830017 | cpgShore | — | values(x.gr)[overs$srow, ]:1462 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25204 | cellmeth_recounts | PrEC: 8, LNCaP: 30, DU145: 1 |  |
| 25204 | cellmeth_diffreps_PrECvsDU145 | A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542 |  |
| 25204 | cellmeth_diffreps_LNCaPvsDU145 | A=27.8, B=0.94, Length=380, Event=Down, log2FC=-4.89, padj=5.16679192666264e-06 |  |
| 25204 | cellexp | id=ENSG00000162526, name=TSSK3, PrEC=1, str=7, LNCaP=28, str=12, DU145=6, str=3 |  |
| 25204 | cellexp | id=ENSG00000225828, name=FAM229A, PrEC=23, str=50, LNCaP=219, str=74, DU145=69, str=30 |  |
| 25204 | tcgaexp | gene=TSSK3, entrez=81629, pos=chr1:32827862-32829924(+), B=37, L=33, M=35, H=47 |  |
| 25204 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |