DMR 25206 chr1:33358401-33358550 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:33358401-33358550 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | HPCA (0bp away) |
| ANODEV p-value | 0.00430043782056 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25206 | HPCA | 604 | uc001bwh.3 | chr1 | 33352098 | 33360247 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25206 | chr1 | 33358525 | 33358794 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:125, expCount:1, expNums:535, expScores:125, srow:97702 |
| 25206 | chr1 | 33358544 | 33358787 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:252, expCount:1, expNums:216, expScores:252, srow:97703 |
| 25206 | chr1 | 33358483 | 33358502 | tfbsConsSites | V$ARNT_02 | score:803, zScore:2.15, srow:71188 |
| 25206 | chr1 | 33358483 | 33358502 | tfbsConsSites | V$MYCMAX_03 | score:831, zScore:2.38, srow:71189 |
| 25206 | chr1 | 33358486 | 33358499 | tfbsConsSites | V$MYCMAX_01 | score:817, zScore:2.02, srow:71190 |
| 25206 | chr1 | 33358487 | 33358498 | tfbsConsSites | V$NMYC_01 | score:945, zScore:2.65, srow:71191 |
| 25206 | chr1 | 33358489 | 33358496 | tfbsConsSites | V$USF_C | score:974, zScore:2.3, srow:71192 |
| 25206 | chr1 | 33358489 | 33358510 | tfbsConsSites | V$HEN1_02 | score:777, zScore:2.05, srow:71193 |
| 25206 | chr1 | 33358481 | 33358497 | phastConsElements100way | lod=14 | score:255, srow:136956 |
| 25206 | chr1 | 33358470 | 33359449 | cpgIsland | CpG: 89 | length:980, cpgNum:89, gcNum:675, perCpg:18.2, perGc:68.9, obsExp:0.79, srow:828 |
| 25206 | chr1 | 33356470 | 33358469 | cpgShore | — | values(x.gr)[overs$srow, ]:1487 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25206 | cellmeth_recounts | PrEC: 3, LNCaP: 112, DU145: 0 |  |
| 25206 | cellmeth_diffreps_PrECvsLNCaP | A=5, B=227, Length=1420, Event=Up, log2FC=5.5, padj=0 |  |
| 25206 | cellmeth_diffreps_LNCaPvsDU145 | A=254.43, B=0, Length=1620, Event=Down, log2FC=-Inf, padj=0 |  |
| 25206 | cellexp | id=ENSG00000121905, name=HPCA, PrEC=5, str=14, LNCaP=9, str=6, DU145=44, str=19 |  |
| 25206 | tcgaexp | gene=HPCA, entrez=3208, pos=chr1:33352098-33360247(+), B=20, L=12, M=15, H=11 |  |
| 25206 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |