DMR 25286 chr1:44883101-44883650 (550bp)
| DMR Stats | |
|---|---|
| Position | chr1:44883101-44883650 (View on UCSC) |
| Width | 550bp |
| Genomic Context | intron |
| Nearest Genes | RNF220 (0bp away) |
| ANODEV p-value | 0.00101138897996 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25286 | RNF220 | 786 | uc001clv.1 | chr1 | 44870960 | 45117396 | + | 550 | 100.0 | 0.27 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 25286 | RNF220 | 786 | uc001clw.1 | chr1 | 44871050 | 45117396 | + | 550 | 100.0 | 0.46 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
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Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25286 | chr1 | 44883373 | 44883381 | phastConsElements100way | lod=31 | score:333, srow:196722 |
| 25286 | chr1 | 44883393 | 44883433 | phastConsElements100way | lod=223 | score:529, srow:196723 |
| 25286 | chr1 | 44883586 | 44883591 | phastConsElements100way | lod=13 | score:247, srow:196724 |
| 25286 | chr1 | 44883137 | 44884272 | cpgIsland | CpG: 110 | length:1136, cpgNum:110, gcNum:770, perCpg:19.4, perGc:67.8, obsExp:0.84, srow:1025 |
| 25286 | chr1 | 44881137 | 44883136 | cpgShore | — | values(x.gr)[overs$srow, ]:1861 |
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- 5 of 30 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25286 | cellmeth_recounts | PrEC: 91, LNCaP: 1876, DU145: 31 |  |
| 25286 | cellmeth_diffreps_PrECvsLNCaP | A=141, B=2026, Length=1440, Event=Up, log2FC=3.84, padj=0 |  |
| 25286 | cellmeth_diffreps_PrECvsDU145 | A=126, B=15, Length=480, Event=Down, log2FC=-3.07, padj=0 |  |
| 25286 | cellmeth_diffreps_LNCaPvsDU145 | A=2165.89, B=41.16, Length=1440, Event=Down, log2FC=-5.72, padj=0 |  |
| 25286 | cellexp | id=ENSG00000187147, name=RNF220, PrEC=2520, str=1177, LNCaP=2966, str=2141, DU145=1705, str=2230 |  |
| 25286 | tcgameth | site:cg00069860, B=0.32, L=0.5, H=0.42 |  |
| 25286 | tcgameth | site:cg08094291, B=0.39, L=0.51, H=0.45 |  |
| 25286 | tcgameth | site:cg18180569, B=0.35, L=0.56, H=0.52 |  |
| 25286 | tcgaexp | gene=RNF220, entrez=55182, pos=chr1:44870960-45117396(+), B=3160, L=3453, M=3424, H=3286 |  |
| 25286 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |