DMR 25290 chr1:45251751-45252450 (700bp)

DMR Stats
Positionchr1:45251751-45252450 (View on UCSC)
Width700bp
Genomic Contextexon
Nearest GenesBEST4 (0bp away)
ANODEV p-value3.52872498114e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25290 BEST4 796 uc001cmm.3 chr1 45249257 45253426 - 700 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (11.86), E3 (33.43), I3 (33.57), E4 (21.43), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25290 chr1 45251872 45252481 wgEncodeRegTfbsClusteredV3 SP4 score:210, expCount:1, expNums:155, expScores:210, srow:128531
25290 chr1 45251882 45252205 wgEncodeRegTfbsClusteredV3 ZEB1 score:245, expCount:1, expNums:121, expScores:245, srow:128532
25290 chr1 45251887 45252694 wgEncodeRegTfbsClusteredV3 ZNF263 score:304, expCount:1, expNums:368, expScores:263, srow:128533
25290 chr1 45251900 45252072 wgEncodeRegTfbsClusteredV3 ELF1 score:571, expCount:3, expNums:88,175,217, expScores:451,571,454, srow:128534
25290 chr1 45251906 45252261 wgEncodeRegTfbsClusteredV3 TAF7 score:158, expCount:1, expNums:158, expScores:158, srow:128535
25290 chr1 45251912 45252335 wgEncodeRegTfbsClusteredV3 TCF3 score:395, expCount:1, expNums:117, expScores:165, srow:128536
25290 chr1 45251991 45252320 wgEncodeRegTfbsClusteredV3 BHLHE40 score:303, expCount:1, expNums:284, expScores:303, srow:128537
25290 chr1 45251995 45252264 wgEncodeRegTfbsClusteredV3 USF1 score:585, expCount:3, expNums:68,118,161, expScores:134,585,211, srow:128538
25290 chr1 45252025 45252300 wgEncodeRegTfbsClusteredV3 USF2 score:322, expCount:1, expNums:319, expScores:322, srow:128539
25290 chr1 45252036 45252345 wgEncodeRegTfbsClusteredV3 PAX5 score:170, expCount:1, expNums:101, expScores:170, srow:128540
25290 chr1 45251766 45251779 tfbsConsSites V$ATF_01 score:870, zScore:2.47, srow:110730
25290 chr1 45251767 45251778 tfbsConsSites V$CREB_Q4 score:897, zScore:2.32, srow:110731
25290 chr1 45251769 45251787 tfbsConsSites V$PAX2_01 score:822, zScore:2.83, srow:110732
25290 chr1 45251771 45251783 tfbsConsSites V$PAX3_01 score:899, zScore:3.75, srow:110733
25290 chr1 45251837 45251845 tfbsConsSites V$MSX1_01 score:909, zScore:1.96, srow:110734
25290 chr1 45251872 45251883 tfbsConsSites V$NFAT_Q6 score:941, zScore:2.02, srow:110735
25290 chr1 45252138 45252157 tfbsConsSites V$MYCMAX_03 score:805, zScore:2.03, srow:110736
25290 chr1 45252141 45252154 tfbsConsSites V$MYCMAX_01 score:845, zScore:2.43, srow:110737
25290 chr1 45252141 45252154 tfbsConsSites V$USF_01 score:860, zScore:2.08, srow:110738
25290 chr1 45252142 45252153 tfbsConsSites V$NMYC_01 score:873, zScore:1.66, srow:110739
25290 chr1 45252142 45252153 tfbsConsSites V$MYOD_01 score:893, zScore:1.79, srow:110740
25290 chr1 45252157 45252164 tfbsConsSites V$MZF1_01 score:1000, zScore:2.23, srow:110741
25290 chr1 45252161 45252168 tfbsConsSites V$STAT3_02 score:996, zScore:1.87, srow:110742
25290 chr1 45252164 45252173 tfbsConsSites V$NKX22_01 score:877, zScore:1.73, srow:110743
25290 chr1 45252179 45252187 tfbsConsSites V$ZIC3_01 score:919, zScore:1.81, srow:110744

Omics Overlaps

Dmrid Omic Set Data Plot
25290 cellmeth_recounts PrEC: 15, LNCaP: 117, DU145: 0
25290 cellmeth_diffreps_PrECvsLNCaP A=21, B=86, Length=460, Event=Up, log2FC=2.03, padj=6.10668622411807e-09
25290 cellmeth_diffreps_PrECvsDU145 A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06
25290 cellmeth_diffreps_LNCaPvsDU145 A=94.08, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0
25290 cellexp id=ENSG00000142959, name=BEST4, PrEC=75, str=28, LNCaP=25, str=5, DU145=32, str=11
25290 tcgameth site:cg06170941, B=0.33, L=0.47, H=0.49
25290 tcgaexp gene=BEST4, entrez=266675, pos=chr1:45249257-45253426(-), B=15, L=12, M=8, H=6
25290 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305