DMR Stats | |
---|---|
Position | chr1:47694801-47695100 (View on UCSC) |
Width | 300bp |
Genomic Context | promoter |
Nearest Genes | TAL1, STIL (0bp away) |
ANODEV p-value | 6.62659293615e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25317 | TAL1 | 850 | uc001cqx.2 | chr1 | 47681963 | 47695443 | - | 300 | 100.0 | 0.25 | 0 | 52.33 | E1 (77.67), I1 (22.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
25317 | TAL1 | 850 | uc001cqy.2 | chr1 | 47681963 | 47697387 | - | 300 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (26), E2 (52), I2 (22.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
25317 | TAL1 | 850 | uc001cqz.1 | chr1 | 47689676 | 47697892 | - | 300 | 100.0 | 0.11 | 1 | 0.0 | E1 (0), I1 (26), E2 (52), I2 (22.33), E3 (0) | 0.0 |
25317 | TAL1 | 850 | uc001cra.1 | chr1 | 47689676 | 47697892 | - | 300 | 100.0 | 0.03 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
25317 | STIL | 850 | uc001crb.1 | chr1 | 47694868 | 47779819 | - | 233 | 77.67 | 0.04 | 1 | 0.0 | E1 (0), I1 (26), E2 (52) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25317 | chr1 | 47694943 | 47695258 | wgEncodeRegTfbsClusteredV3 | YY1 | score:168, expCount:1, expNums:245, expScores:168, srow:135420 |
25317 | chr1 | 47694954 | 47695052 | wgEncodeRegTfbsClusteredV3 | MAX | score:275, expCount:1, expNums:223, expScores:275, srow:135421 |
25317 | chr1 | 47694965 | 47695324 | wgEncodeRegTfbsClusteredV3 | IRF1 | score:141, expCount:1, expNums:506, expScores:141, srow:135422 |
25317 | chr1 | 47694969 | 47695673 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:127, expCount:2, expNums:358,578, expScores:127,125, srow:135423 |
25317 | chr1 | 47695024 | 47695547 | wgEncodeRegTfbsClusteredV3 | HDAC1 | score:199, expCount:1, expNums:26, expScores:199, srow:135424 |
25317 | chr1 | 47694869 | 47694884 | tfbsConsSites | V$MEF2_01 | score:784, zScore:2.27, srow:116278 |
25317 | chr1 | 47695029 | 47695036 | tfbsConsSites | V$E2F_02 | score:896, zScore:2.02, srow:116279 |
25317 | chr1 | 47695029 | 47695052 | tfbsConsSites | V$STAT5A_02 | score:797, zScore:2.61, srow:116280 |
25317 | chr1 | 47695044 | 47695052 | tfbsConsSites | V$STAT_01 | score:947, zScore:2.44, srow:116281 |
25317 | chr1 | 47695045 | 47695064 | tfbsConsSites | V$YY1_02 | score:786, zScore:2.06, srow:116282 |
25317 | chr1 | 47695049 | 47695062 | tfbsConsSites | V$GATA1_02 | score:879, zScore:2.55, srow:116283 |
25317 | chr1 | 47695052 | 47695060 | tfbsConsSites | V$GATA3_01 | score:937, zScore:1.95, srow:116284 |
25317 | chr1 | 47694860 | 47694886 | phastConsElements100way | lod=121 | score:468, srow:211403 |
25317 | chr1 | 47694903 | 47694915 | phastConsElements100way | lod=19 | score:285, srow:211404 |
25317 | chr1 | 47694923 | 47694928 | phastConsElements100way | lod=20 | score:290, srow:211405 |
25317 | chr1 | 47694987 | 47695130 | phastConsElements100way | lod=600 | score:627, srow:211406 |
25317 | chr1 | 47694505 | 47696504 | cpgShore | — | values(x.gr)[overs$srow, ]:1958 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25317 | cellmeth_recounts | PrEC: 17, LNCaP: 94, DU145: 12 | |
25317 | cellmeth_diffreps_PrECvsLNCaP | A=27, B=235, Length=860, Event=Up, log2FC=3.12, padj=0 | |
25317 | cellmeth_diffreps_LNCaPvsDU145 | A=310.02, B=15.9, Length=1300, Event=Down, log2FC=-4.29, padj=0 | |
25317 | cellexp | id=ENSG00000162367, name=TAL1, PrEC=0, str=0, LNCaP=2, str=0, DU145=9, str=3 | |
25317 | cellexp | id=ENSG00000226252, name=RP1-18D14.7, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
25317 | tcgameth | site:cg10026317, B=0.58, L=0.77, H=0.75 | |
25317 | tcgaexp | gene=STIL, entrez=6491, pos=chr1:47694868-47779819(-), B=204, L=429, M=420, H=582 | |
25317 | tcgaexp | gene=TAL1, entrez=6886, pos=chr1:47681963-47697892(-), B=122, L=76, M=86, H=94 | |
25317 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |