DMR 25353 chr1:53308701-53309450 (750bp)

DMR Stats
Positionchr1:53308701-53309450 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesZYG11A (0bp away)
ANODEV p-value8.85617084792e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25353 ZYG11A 891 uc001cuk.2 chr1 53308183 53360247 + 750 100.0 0.7 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
25353 ZYG11A 891 uc001cul.2 chr1 53308183 53360247 + 750 100.0 0.91 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25353 chr1 53308691 53309715 wgEncodeRegTfbsClusteredV3 UBTF score:293, expCount:2, expNums:548,549, expScores:160,293, srow:143311
25353 chr1 53308692 53309067 wgEncodeRegTfbsClusteredV3 TBP score:184, expCount:1, expNums:545, expScores:184, srow:143312
25353 chr1 53308713 53309181 wgEncodeRegTfbsClusteredV3 MYC score:247, expCount:4, expNums:486,487,620,624, expScores:115,171,149,247, srow:143313
25353 chr1 53308716 53308975 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:216, expCount:1, expNums:232, expScores:216, srow:143314
25353 chr1 53308783 53309286 wgEncodeRegTfbsClusteredV3 CHD1 score:208, expCount:1, expNums:23, expScores:208, srow:143315
25353 chr1 53308979 53309211 wgEncodeRegTfbsClusteredV3 CTCF score:192, expCount:2, expNums:597,604, expScores:125,192, srow:143316
25353 chr1 53309095 53309370 wgEncodeRegTfbsClusteredV3 SPI1 score:317, expCount:1, expNums:107, expScores:317, srow:143317
25353 chr1 53309124 53309338 wgEncodeRegTfbsClusteredV3 EGR1 score:925, expCount:1, expNums:216, expScores:925, srow:143318
25353 chr1 53309394 53309849 wgEncodeRegTfbsClusteredV3 RPC155 score:488, expCount:1, expNums:407, expScores:488, srow:143319
25353 chr1 53309422 53309777 wgEncodeRegTfbsClusteredV3 GTF3C2 score:326, expCount:1, expNums:415, expScores:326, srow:143320
25353 chr1 53308295 53309262 cpgIsland CpG: 112 length:968, cpgNum:112, gcNum:653, perCpg:23.1, perGc:67.5, obsExp:1.02, srow:1127
25353 chr1 53309263 53311262 cpgShore — values(x.gr)[overs$srow, ]:2052

Omics Overlaps

Dmrid Omic Set Data Plot
25353 cellmeth_recounts PrEC: 5, LNCaP: 238, DU145: 0
25353 cellmeth_diffreps_PrECvsLNCaP A=6, B=199, Length=920, Event=Up, log2FC=5.05, padj=0
25353 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442
25353 cellmeth_diffreps_LNCaPvsDU145 A=213.81, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
25353 cellexp id=ENSG00000203995, name=ZYG11A, PrEC=38, str=7, LNCaP=38, str=77, DU145=814, str=921
25353 tcgameth site:cg00397635, B=0.25, L=0.61, H=0.52
25353 tcgameth site:cg06784991, B=0.23, L=0.46, H=0.44
25353 tcgameth site:cg18184411, B=0.28, L=0.56, H=0.49
25353 tcgameth site:cg24466241, B=0.25, L=0.5, H=0.42
25353 tcgaexp gene=ZYG11A, entrez=440590, pos=chr1:53308183-53360247(+), B=115, L=208, M=185, H=295
25353 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305