DMR 25475 chr1:94146151-94146550 (400bp)
| DMR Stats | |
|---|---|
| Position | chr1:94146151-94146550 (View on UCSC) |
| Width | 400bp |
| Genomic Context | promoter |
| Nearest Genes | BCAR3 (0bp away) |
| ANODEV p-value | 2.23247011035e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25475 | BCAR3 | 1171 | uc001dpz.4 | chr1 | 94027343 | 94146926 | - | 400 | 100.0 | 0.69 | 0 | 31.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 25475 | BCAR3 | 1171 | uc001dqa.4 | chr1 | 94027343 | 94147394 | - | 400 | 100.0 | 0.69 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 25475 | BCAR3 | 1171 | uc001dqb.4 | chr1 | 94027343 | 94312706 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25475 | chr1 | 94146164 | 94146177 | tfbsConsSites | V$ROAZ_01 | score:739, zScore:1.64, srow:224466 |
| 25475 | chr1 | 94146209 | 94146221 | tfbsConsSites | V$ZID_01 | score:869, zScore:2.07, srow:224467 |
| 25475 | chr1 | 94146550 | 94146563 | tfbsConsSites | V$FAC1_01 | score:847, zScore:1.93, srow:224468 |
| 25475 | chr1 | 94145797 | 94146647 | oreganno | OREG0013605 | id:OREG0013605, srow:1057 |
| 25475 | chr1 | 94146155 | 94146160 | phastConsElements100way | lod=14 | score:255, srow:398566 |
| 25475 | chr1 | 94146166 | 94146179 | phastConsElements100way | lod=36 | score:348, srow:398567 |
| 25475 | chr1 | 94146184 | 94146194 | phastConsElements100way | lod=26 | score:316, srow:398568 |
| 25475 | chr1 | 94146322 | 94147504 | cpgIsland | CpG: 116 | length:1183, cpgNum:116, gcNum:778, perCpg:19.6, perGc:65.8, obsExp:0.91, srow:1337 |
| 25475 | chr1 | 94144322 | 94146321 | cpgShore | — | values(x.gr)[overs$srow, ]:2447 |
- Previous
- Page 2 of 2
- 9 of 34 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25475 | cellmeth_recounts | PrEC: 0, LNCaP: 118, DU145: 0 |  |
| 25475 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=160, Length=940, Event=Up, log2FC=Inf, padj=0 |  |
| 25475 | cellmeth_diffreps_LNCaPvsDU145 | A=171.05, B=0, Length=940, Event=Down, log2FC=-Inf, padj=0 |  |
| 25475 | cellexp | id=ENSG00000137936, name=BCAR3, PrEC=10989, str=8783, LNCaP=486, str=350, DU145=5021, str=6953 |  |
| 25475 | tcgameth | site:cg18060199, B=0.23, L=0.56, H=0.54 |  |
| 25475 | tcgaexp | gene=BCAR3, entrez=8412, pos=chr1:94027343-94312706(-), B=1309, L=868, M=746, H=673 |  |
| 25475 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |