DMR 25868 chr1:228246551-228247200 (650bp)

DMR Stats
Positionchr1:228246551-228247200 (View on UCSC)
Width650bp
Genomic Context3' end
Nearest GenesWNT3A (0bp away)
ANODEV p-value0.00212354790097
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25868 WNT3A 2661 uc001hrp.2 chr1 228194723 228248168 + 650 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (73.23), I4 (6), E5 (0) 4.92
25868 WNT3A 2661 uc001hrq.2 chr1 228194723 228248972 + 650 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (79.08) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25868 chr1 228246733 228246733 cosmic COSM425497 srow:113776
25868 chr1 228246752 228246752 cosmic COSM904929 srow:113777
25868 chr1 228246761 228246761 cosmic COSM1601782 srow:113778
25868 chr1 228246774 228246774 cosmic COSM464076 srow:113779
25868 chr1 228246785 228246785 cosmic COSM1501367 srow:113780
25868 chr1 228246812 228246812 cosmic COSM425498 srow:113781
25868 chr1 228246881 228246881 cosmic COSM1160899 srow:113782
25868 chr1 228246914 228246914 cosmic COSM1339436 srow:113783
25868 chr1 228246923 228246923 cosmic COSM1501366 srow:113784
25868 chr1 228246937 228246937 cosmic COSM1501365 srow:113785
25868 chr1 228246978 228246978 cosmic COSM904930 srow:113786
25868 chr1 228246684 228246733 phastConsElements100way lod=525 score:613, srow:810211
25868 chr1 228246735 228246754 phastConsElements100way lod=315 score:563, srow:810212
25868 chr1 228246756 228246772 phastConsElements100way lod=271 score:548, srow:810213
25868 chr1 228246774 228246787 phastConsElements100way lod=162 score:497, srow:810214
25868 chr1 228246789 228246790 phastConsElements100way lod=46 score:373, srow:810215
25868 chr1 228246792 228246820 phastConsElements100way lod=404 score:588, srow:810216
25868 chr1 228246822 228246823 phastConsElements100way lod=33 score:340, srow:810217
25868 chr1 228246825 228246871 phastConsElements100way lod=656 score:636, srow:810218
25868 chr1 228246873 228246874 phastConsElements100way lod=27 score:320, srow:810219
25868 chr1 228246877 228246907 phastConsElements100way lod=340 score:570, srow:810220
25868 chr1 228246909 228246913 phastConsElements100way lod=57 score:394, srow:810221
25868 chr1 228246915 228246928 phastConsElements100way lod=199 score:517, srow:810222
25868 chr1 228246930 228246937 phastConsElements100way lod=109 score:458, srow:810223
25868 chr1 228246939 228246949 phastConsElements100way lod=151 score:490, srow:810224

Omics Overlaps

Dmrid Omic Set Data Plot
25868 cellmeth_recounts PrEC: 77, LNCaP: 348, DU145: 12
25868 cellmeth_diffreps_PrECvsLNCaP A=75, B=235, Length=640, Event=Up, log2FC=1.65, padj=0
25868 cellmeth_diffreps_PrECvsDU145 A=115, B=9, Length=760, Event=Down, log2FC=-3.68, padj=0
25868 cellmeth_diffreps_LNCaPvsDU145 A=308.95, B=8.42, Length=1120, Event=Down, log2FC=-5.2, padj=0
25868 cellexp id=ENSG00000154342, name=WNT3A, PrEC=0, str=14, LNCaP=1, str=0, DU145=10, str=5
25868 tcgameth site:cg09075558, B=0.5, L=0.57, H=0.61
25868 tcgameth site:cg09511896, B=0.36, L=0.48, H=0.48
25868 tcgameth site:cg12359809, B=0.49, L=0.63, H=0.63
25868 tcgameth site:cg23663760, B=0.24, L=0.27, H=0.26
25868 tcgaexp gene=WNT3A, entrez=89780, pos=chr1:228194723-228248972(+), B=193, L=87, M=92, H=58