DMR 25951 chr2:45351-45700 (350bp)
| DMR Stats | |
|---|---|
| Position | chr2:45351-45700 (View on UCSC) |
| Width | 350bp |
| Genomic Context | exon |
| Nearest Genes | FAM110C (0bp away) |
| ANODEV p-value | 2.69284382914e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25951 | FAM110C | 15961 | uc010yim.2 | chr2 | 38814 | 46588 | - | 350 | 100.0 | 0.01 | 0 | 0.0 | E1 (74.57), I1 (25.43), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25951 | chr2 | 45670 | 45671 | phastConsElements100way | lod=18 | score:280, srow:4371911 |
| 25951 | chr2 | 45673 | 45683 | phastConsElements100way | lod=61 | score:400, srow:4371912 |
| 25951 | chr2 | 45688 | 45689 | phastConsElements100way | lod=22 | score:300, srow:4371913 |
| 25951 | chr2 | 45691 | 45692 | phastConsElements100way | lod=14 | score:255, srow:4371914 |
| 25951 | chr2 | 45697 | 45698 | phastConsElements100way | lod=25 | score:312, srow:4371915 |
| 25951 | chr2 | 45511 | 46559 | cpgIsland | CpG: 124 | length:1049, cpgNum:124, gcNum:734, perCpg:23.6, perGc:70, obsExp:0.97, srow:14594 |
| 25951 | chr2 | 43511 | 45510 | cpgShore | — | values(x.gr)[overs$srow, ]:26232 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25951 | cellmeth_recounts | PrEC: 1, LNCaP: 107, DU145: 0 |  |
| 25951 | cellmeth_diffreps_PrECvsLNCaP | A=1, B=164, Length=1120, Event=Up, log2FC=7.36, padj=0 |  |
| 25951 | cellmeth_diffreps_LNCaPvsDU145 | A=175.32, B=0, Length=1120, Event=Down, log2FC=-Inf, padj=0 |  |
| 25951 | cellexp | id=ENSG00000184731, name=FAM110C, PrEC=4535, str=4854, LNCaP=224, str=138, DU145=780, str=633 |  |
| 25951 | tcgameth | site:cg15237857, B=0.27, L=0.55, H=0.51 |  |
| 25951 | tcgaexp | gene=FAM110C, entrez=642273, pos=chr2:38814-46588(-), B=105, L=24, M=26, H=25 |  |