DMR 26379 chr2:105473001-105473300 (300bp)

DMR Stats
Positionchr2:105473001-105473300 (View on UCSC)
Width300bp
Genomic Context3' end
Nearest GenesPOU3F3 (0bp away)
ANODEV p-value0.000287676041294
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26379 POU3F3 16779 uc010ywg.2 chr2 105471969 105473471 + 300 100.0 0.05 0 0.0 E1 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26379 chr2 105473102 105473102 cosmic COSM1004734 srow:664979
26379 chr2 105473129 105473129 cosmic COSM1004735 srow:664980
26379 chr2 105473170 105473170 cosmic COSM1398566 srow:664981
26379 chr2 105473175 105473175 cosmic COSM1731864 srow:664982
26379 chr2 105473177 105473177 cosmic COSM390570 srow:664983
26379 chr2 105473188 105473188 cosmic COSM359491 srow:664984
26379 chr2 105473215 105473215 cosmic COSM378304 srow:664985
26379 chr2 105473217 105473217 cosmic COSM1398567 srow:664986
26379 chr2 105473256 105473256 cosmic COSM145799 srow:664987
26379 chr2 105473297 105473297 cosmic COSM397677 srow:664988
26379 chr2 105472926 105473005 phastConsElements100way lod=1012 score:678, srow:4710310
26379 chr2 105473007 105473101 phastConsElements100way lod=1130 score:689, srow:4710311
26379 chr2 105473104 105473170 phastConsElements100way lod=824 score:658, srow:4710312
26379 chr2 105473172 105473173 phastConsElements100way lod=35 score:345, srow:4710313
26379 chr2 105473175 105473227 phastConsElements100way lod=652 score:635, srow:4710314
26379 chr2 105473230 105473245 phastConsElements100way lod=187 score:511, srow:4710315
26379 chr2 105473247 105473266 phastConsElements100way lod=208 score:522, srow:4710316
26379 chr2 105473268 105473365 phastConsElements100way lod=1100 score:687, srow:4710317
26379 chr2 105468852 105473488 cpgIsland CpG: 334 length:4637, cpgNum:334, gcNum:2430, perCpg:14.4, perGc:52.4, obsExp:1.05, srow:15326

Omics Overlaps

Dmrid Omic Set Data Plot
26379 cellmeth_recounts PrEC: 1, LNCaP: 1155, DU145: 33
26379 cellmeth_diffreps_PrECvsLNCaP A=34, B=3498, Length=4060, Event=Up, log2FC=6.68, padj=0
26379 cellmeth_diffreps_PrECvsDU145 A=1, B=24, Length=300, Event=Up, log2FC=4.58, padj=2.0670567223746e-05
26379 cellmeth_diffreps_LNCaPvsDU145 A=3737.38, B=115.06, Length=4000, Event=Down, log2FC=-5.02, padj=0
26379 cellexp id=ENSG00000198914, name=POU3F3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 cellexp id=ENSG00000269707, name=RP11-13J10.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 tcgameth site:cg16767916, B=0.42, L=0.61, H=0.59
26379 tcgaexp gene=POU3F3, entrez=5455, pos=chr2:105471969-105473471(+), B=252, L=0, M=1, H=1