DMR 26620 chr2:201450451-201451650 (1200bp)

DMR Stats
Positionchr2:201450451-201451650 (View on UCSC)
Width1200bp
Genomic Contextpromoter
Nearest GenesAOX1 (0bp away)
ANODEV p-value1.87223150871e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26620 AOX1 17443 uc002uvx.3 chr2 201450731 201536217 + 920 76.67 0.12 0 65.0 E1 (12.17), I1 (64.58), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26620 chr2 201450766 201451255 wgEncodeRegTfbsClusteredV3 TAF1 score:185, expCount:1, expNums:157, expScores:185, srow:2366519
26620 chr2 201450807 201450943 wgEncodeRegTfbsClusteredV3 RAD21 score:497, expCount:1, expNums:193, expScores:497, srow:2366520
26620 chr2 201451127 201451366 wgEncodeRegTfbsClusteredV3 RAD21 score:177, expCount:1, expNums:149, expScores:177, srow:2366521
26620 chr2 201450727 201450736 tfbsConsSites V$SP1_01 score:938, zScore:1.87, srow:2924296
26620 chr2 201450857 201450871 tfbsConsSites V$TAXCREB_01 score:773, zScore:1.64, srow:2924297
26620 chr2 201451564 201451587 tfbsConsSites V$COMP1_01 score:818, zScore:2.37, srow:2924298
26620 chr2 201450843 201450843 cosmic COSM294120 srow:714750
26620 chr2 201450857 201450857 cosmic COSM476733 srow:714751
26620 chr2 201450849 201450881 phastConsElements100way lod=153 score:491, srow:5064386
26620 chr2 201450527 201451027 cpgIsland CpG: 47 length:501, cpgNum:47, gcNum:328, perCpg:18.8, perGc:65.5, obsExp:0.88, srow:15861
26620 chr2 201448527 201450526 cpgShore — values(x.gr)[overs$srow, ]:28560
26620 chr2 201451028 201453027 cpgShore — values(x.gr)[overs$srow, ]:28561

Omics Overlaps

Dmrid Omic Set Data Plot
26620 cellmeth_recounts PrEC: 6, LNCaP: 53, DU145: 13
26620 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=600, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
26620 cellmeth_diffreps_LNCaPvsDU145 A=17.1, B=0.94, Length=220, Event=Down, log2FC=-4.19, padj=0.00311648242974852
26620 cellexp id=ENSG00000138356, name=AOX1, PrEC=1023, str=1902, LNCaP=13, str=32, DU145=469, str=462
26620 tcgameth site:cg02144933, B=0.08, L=0.4, H=0.43
26620 tcgameth site:cg02657832, B=0.1, L=0.36, H=0.41
26620 tcgameth site:cg04380340, B=0.1, L=0.51, H=0.54
26620 tcgameth site:cg08266417, B=0.04, L=0.46, H=0.47
26620 tcgameth site:cg08952506, B=0.09, L=0.45, H=0.47
26620 tcgameth site:cg09729613, B=0.07, L=0.48, H=0.47
26620 tcgameth site:cg12627583, B=0.15, L=0.57, H=0.58
26620 tcgameth site:cg13000082, B=0.12, L=0.54, H=0.55
26620 tcgameth site:cg13875120, B=0.06, L=0.59, H=0.63
26620 tcgameth site:cg14383422, B=0.21, L=0.66, H=0.64
26620 tcgameth site:cg22953017, B=0.39, L=0.54, H=0.55
26620 tcgameth site:cg24569637, B=0.04, L=0.4, H=0.45
26620 tcgaexp gene=AOX1, entrez=316, pos=chr2:201450731-201536217(+), B=5499, L=1572, M=1303, H=947