DMR 26748 chr2:235404251-235404800 (550bp)
| DMR Stats | |
|---|---|
| Position | chr2:235404251-235404800 (View on UCSC) |
| Width | 550bp |
| Genomic Context | promoter |
| Nearest Genes | ARL4C (0bp away) |
| ANODEV p-value | 1.30140342947e-11 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26748 | ARL4C | 17769 | uc002vvm.4 | chr2 | 235401686 | 235405233 | - | 550 | 100.0 | 0.1 | 0 | 12.18 | E1 (26.36), I1 (32), E2 (41.82) | 0.0 |
| 26748 | ARL4C | 17769 | uc002vvn.3 | chr2 | 235401686 | 235405693 | - | 550 | 100.0 | 0.1 | 0 | 0.0 | E1 (100) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26748 | chr2 | 235404668 | 235404668 | cosmic | COSM117473 | srow:732979 |
| 26748 | chr2 | 235404686 | 235404686 | cosmic | COSM1018210 | srow:732980 |
| 26748 | chr2 | 235404720 | 235404720 | cosmic | COSM1318963 | srow:732981 |
| 26748 | chr2 | 235404735 | 235404735 | cosmic | COSM1669876 | srow:732982 |
| 26748 | chr2 | 235404247 | 235404258 | phastConsElements100way | lod=17 | score:274, srow:5207776 |
| 26748 | chr2 | 235404272 | 235404286 | phastConsElements100way | lod=51 | score:383, srow:5207777 |
| 26748 | chr2 | 235404313 | 235404317 | phastConsElements100way | lod=13 | score:247, srow:5207778 |
| 26748 | chr2 | 235404323 | 235404326 | phastConsElements100way | lod=16 | score:268, srow:5207779 |
| 26748 | chr2 | 235404387 | 235404406 | phastConsElements100way | lod=78 | score:425, srow:5207780 |
| 26748 | chr2 | 235404410 | 235404413 | phastConsElements100way | lod=13 | score:247, srow:5207781 |
| 26748 | chr2 | 235404517 | 235404554 | phastConsElements100way | lod=165 | score:499, srow:5207782 |
| 26748 | chr2 | 235404585 | 235404597 | phastConsElements100way | lod=18 | score:280, srow:5207783 |
| 26748 | chr2 | 235404629 | 235404633 | phastConsElements100way | lod=13 | score:247, srow:5207784 |
| 26748 | chr2 | 235404650 | 235404781 | phastConsElements100way | lod=1390 | score:710, srow:5207785 |
| 26748 | chr2 | 235404785 | 235404795 | phastConsElements100way | lod=104 | score:453, srow:5207786 |
| 26748 | chr2 | 235404797 | 235404816 | phastConsElements100way | lod=231 | score:532, srow:5207787 |
| 26748 | chr2 | 235404503 | 235406541 | cpgIsland | CpG: 184 | length:2039, cpgNum:184, gcNum:1225, perCpg:18, perGc:60.1, obsExp:1, srow:16105 |
| 26748 | chr2 | 235402503 | 235404502 | cpgShore | — | values(x.gr)[overs$srow, ]:29013 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26748 | cellmeth_recounts | PrEC: 1, LNCaP: 1487, DU145: 6 |  |
| 26748 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=2261, Length=1600, Event=Up, log2FC=7.06, padj=0 |  |
| 26748 | cellmeth_diffreps_LNCaPvsDU145 | A=2417.11, B=9.35, Length=1620, Event=Down, log2FC=-8.01, padj=0 |  |
| 26748 | cellexp | id=ENSG00000188042, name=ARL4C, PrEC=24273, str=25479, LNCaP=161, str=243, DU145=477, str=675 |  |
| 26748 | tcgameth | site:cg11509907, B=0.09, L=0.37, H=0.38 |  |
| 26748 | tcgaexp | gene=ARL4C, entrez=10123, pos=chr2:235401686-235405693(-), B=2057, L=1304, M=1190, H=1246 |  |