DMR 27108 chr3:124860351-124861100 (750bp)

DMR Stats
Positionchr3:124860351-124861100 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesSLC12A8 (0bp away)
ANODEV p-value3.34240443869e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27108 SLC12A8 20639 uc003ehv.4 chr3 124801480 124931609 - 750 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc003ehw.4 chr3 124801480 124998091 - 750 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc010hrz.1 chr3 124837613 124931609 - 750 100.0 0.35 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27108 chr3 124860352 124860591 wgEncodeRegTfbsClusteredV3 BCL11A score:658, expCount:1, expNums:82, expScores:658, srow:2874526
27108 chr3 124860353 124860646 wgEncodeRegTfbsClusteredV3 TCF3 score:329, expCount:1, expNums:117, expScores:329, srow:2874527
27108 chr3 124860359 124860622 wgEncodeRegTfbsClusteredV3 PAX5 score:675, expCount:4, expNums:100,101,122,129, expScores:343,675,135,274, srow:2874528
27108 chr3 124860371 124860546 wgEncodeRegTfbsClusteredV3 RXRA score:128, expCount:1, expNums:110, expScores:128, srow:2874529
27108 chr3 124860372 124860538 wgEncodeRegTfbsClusteredV3 SP1 score:276, expCount:1, expNums:112, expScores:276, srow:2874530
27108 chr3 124860374 124860506 wgEncodeRegTfbsClusteredV3 TCF12 score:336, expCount:1, expNums:116, expScores:336, srow:2874531
27108 chr3 124860408 124860549 wgEncodeRegTfbsClusteredV3 EGR1 score:567, expCount:1, expNums:87, expScores:567, srow:2874532
27108 chr3 124860415 124860638 wgEncodeRegTfbsClusteredV3 SRF score:436, expCount:1, expNums:113, expScores:436, srow:2874533
27108 chr3 124860430 124860514 wgEncodeRegTfbsClusteredV3 IRF4 score:270, expCount:1, expNums:92, expScores:270, srow:2874534
27108 chr3 124860430 124861019 wgEncodeRegTfbsClusteredV3 IKZF1 score:227, expCount:1, expNums:294, expScores:227, srow:2874535
27108 chr3 124860473 124861443 wgEncodeRegTfbsClusteredV3 POLR2A score:605, expCount:9, expNums:105,130,131,328,330,332,336,338,619, expScores:548,260,456,242,365,362,232,344,123, srow:2874536
27108 chr3 124860660 124860983 wgEncodeRegTfbsClusteredV3 BACH1 score:160, expCount:1, expNums:341, expScores:160, srow:2874537
27108 chr3 124860676 124861051 wgEncodeRegTfbsClusteredV3 TBP score:153, expCount:1, expNums:359, expScores:153, srow:2874538
27108 chr3 124860712 124861141 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:56, expNums:2,5,20,37,39,42,44,137,290,597,601,603,604,605,606,607,609,618,635,636,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,672,673,674,675,676,677,678,682,685,686,687, expScores:486,318,195,170,133,138,111,249,819,486,680,1000,1000,1000,787,1000,229,93,593,231,369,137,128,384,201,104,166,378,668,795,748,632,814,600,571,363,153,113,282,129,333,367,109,133,170,293,317,186,337,380,540,239,158,169,433,284, srow:2874539
27108 chr3 124860720 124861095 wgEncodeRegTfbsClusteredV3 TAF1 score:206, expCount:2, expNums:115,132, expScores:121,206, srow:2874540
27108 chr3 124860736 124861036 wgEncodeRegTfbsClusteredV3 RAD21 score:569, expCount:5, expNums:108,149,264,310,355, expScores:296,569,178,172,221, srow:2874541
27108 chr3 124860748 124861071 wgEncodeRegTfbsClusteredV3 YY1 score:177, expCount:1, expNums:128, expScores:177, srow:2874542
27108 chr3 124860767 124861076 wgEncodeRegTfbsClusteredV3 POU2F2 score:237, expCount:1, expNums:125, expScores:237, srow:2874543
27108 chr3 124860774 124860885 wgEncodeRegTfbsClusteredV3 SPI1 score:608, expCount:2, expNums:107,126, expScores:465,608, srow:2874544
27108 chr3 124860780 124861039 wgEncodeRegTfbsClusteredV3 TCF12 score:296, expCount:1, expNums:116, expScores:296, srow:2874545
27108 chr3 124860780 124861059 wgEncodeRegTfbsClusteredV3 PAX5 score:160, expCount:1, expNums:129, expScores:160, srow:2874546
27108 chr3 124860787 124861026 wgEncodeRegTfbsClusteredV3 EGR1 score:168, expCount:1, expNums:87, expScores:168, srow:2874547
27108 chr3 124860847 124860949 wgEncodeRegTfbsClusteredV3 TCF3 score:227, expCount:1, expNums:117, expScores:227, srow:2874548
27108 chr3 124860659 124860672 tfbsConsSites V$CEBPB_02 score:849, zScore:1.7, srow:3537655
27108 chr3 124860733 124860742 tfbsConsSites V$NRF2_01 score:907, zScore:1.98, srow:3537656

Omics Overlaps

Dmrid Omic Set Data Plot
27108 cellmeth_recounts PrEC: 25, LNCaP: 285, DU145: 17
27108 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
27108 cellmeth_diffreps_PrECvsLNCaP A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0
27108 cellmeth_diffreps_LNCaPvsDU145 A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0
27108 cellexp id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610
27108 tcgameth site:cg12788878, B=0.26, L=0.53, H=0.52
27108 tcgameth site:cg26107890, B=0.32, L=0.74, H=0.72
27108 tcgameth site:cg26125625, B=0.26, L=0.5, H=0.48
27108 tcgaexp gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315