DMR 27334 chr3:194118551-194119150 (600bp)
| DMR Stats | |
|---|---|
| Position | chr3:194118551-194119150 (View on UCSC) |
| Width | 600bp |
| Genomic Context | promoter |
| Nearest Genes | GP5 (0bp away) |
| ANODEV p-value | 1.72874552387e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27334 | GP5 | 21173 | uc003ftv.1 | chr3 | 194115550 | 194119995 | - | 600 | 100.0 | 2.67 | 0 | 0.0 | E1 (0), I1 (23), E2 (77.17) | 0.0 |
| 27334 | GP5 | 21173 | uc021xiz.1 | chr3 | 194117329 | 194119011 | - | 461 | 76.83 | 1.69 | 0 | 100.0 | E1 (76.83) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27334 | chr3 | 194118856 | 194118856 | cosmic | COSM583105 | srow:874632 |
| 27334 | chr3 | 194118856 | 194118856 | cosmic | COSM583104 | srow:874633 |
| 27334 | chr3 | 194118872 | 194118872 | cosmic | COSM729891 | srow:874634 |
| 27334 | chr3 | 194118872 | 194118872 | cosmic | COSM729890 | srow:874635 |
| 27334 | chr3 | 194118889 | 194118889 | cosmic | COSM1471535 | srow:874636 |
| 27334 | chr3 | 194118889 | 194118889 | cosmic | COSM1471534 | srow:874637 |
| 27334 | chr3 | 194118919 | 194118919 | cosmic | COSM293459 | srow:874638 |
| 27334 | chr3 | 194118919 | 194118919 | cosmic | COSM293458 | srow:874639 |
| 27334 | chr3 | 194118928 | 194118928 | cosmic | COSM108851 | srow:874640 |
| 27334 | chr3 | 194118928 | 194118928 | cosmic | COSM108852 | srow:874641 |
| 27334 | chr3 | 194118968 | 194118968 | cosmic | COSM1208504 | srow:874642 |
| 27334 | chr3 | 194118968 | 194118968 | cosmic | COSM1208503 | srow:874643 |
| 27334 | chr3 | 194118986 | 194118986 | cosmic | COSM1421773 | srow:874644 |
| 27334 | chr3 | 194118986 | 194118986 | cosmic | COSM1421772 | srow:874645 |
| 27334 | chr3 | 194118550 | 194118554 | phastConsElements100way | lod=27 | score:320, srow:6338111 |
| 27334 | chr3 | 194118560 | 194118561 | phastConsElements100way | lod=37 | score:351, srow:6338112 |
| 27334 | chr3 | 194118568 | 194118570 | phastConsElements100way | lod=22 | score:300, srow:6338113 |
| 27334 | chr3 | 194118578 | 194118579 | phastConsElements100way | lod=25 | score:312, srow:6338114 |
| 27334 | chr3 | 194118587 | 194118590 | phastConsElements100way | lod=25 | score:312, srow:6338115 |
| 27334 | chr3 | 194118611 | 194118612 | phastConsElements100way | lod=21 | score:295, srow:6338116 |
| 27334 | chr3 | 194118617 | 194118618 | phastConsElements100way | lod=30 | score:330, srow:6338117 |
| 27334 | chr3 | 194118626 | 194118626 | phastConsElements100way | lod=15 | score:262, srow:6338118 |
| 27334 | chr3 | 194118632 | 194118632 | phastConsElements100way | lod=15 | score:262, srow:6338119 |
| 27334 | chr3 | 194118634 | 194118638 | phastConsElements100way | lod=15 | score:262, srow:6338120 |
| 27334 | chr3 | 194118641 | 194118642 | phastConsElements100way | lod=25 | score:312, srow:6338121 |
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27334 | cellmeth_recounts | PrEC: 32, LNCaP: 530, DU145: 9 |  |
| 27334 | cellmeth_diffreps_PrECvsLNCaP | A=169, B=1842, Length=2560, Event=Up, log2FC=3.45, padj=0 |  |
| 27334 | cellmeth_diffreps_PrECvsDU145 | A=45, B=2, Length=420, Event=Down, log2FC=-4.49, padj=3.8539251522487e-10 |  |
| 27334 | cellmeth_diffreps_LNCaPvsDU145 | A=1743.61, B=35.55, Length=1880, Event=Down, log2FC=-5.62, padj=0 |  |
| 27334 | cellexp | id=ENSG00000178732, name=GP5, PrEC=2, str=5, LNCaP=1, str=0, DU145=3, str=5 |  |
| 27334 | tcgameth | site:cg18780769, B=0.42, L=0.57, H=0.58 |  |
| 27334 | tcgaexp | gene=GP5, entrez=2814, pos=chr3:194115550-194119995(-), B=8, L=4, M=4, H=6 |  |