DMR 27710 chr4:141488801-141489150 (350bp)
| DMR Stats | |
|---|---|
| Position | chr4:141488801-141489150 (View on UCSC) |
| Width | 350bp |
| Genomic Context | exon |
| Nearest Genes | UCP1 (0bp away) |
| ANODEV p-value | 2.83004409837e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27710 | UCP1 | 22085 | uc011chj.2 | chr4 | 141481050 | 141489959 | - | 350 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (5.71), E2 (56.86), I2 (37.71), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 27710 | UCP1 | 22085 | uc011chk.2 | chr4 | 141481050 | 141489959 | - | 350 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (5.71), E2 (56.86), I2 (37.71), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27710 | chr4 | 141489046 | 141489053 | phastConsElements100way | lod=71 | score:415, srow:6742212 |
| 27710 | chr4 | 141489055 | 141489056 | phastConsElements100way | lod=33 | score:340, srow:6742213 |
| 27710 | chr4 | 141489061 | 141489077 | phastConsElements100way | lod=124 | score:471, srow:6742214 |
| 27710 | chr4 | 141489079 | 141489086 | phastConsElements100way | lod=78 | score:425, srow:6742215 |
| 27710 | chr4 | 141489088 | 141489095 | phastConsElements100way | lod=73 | score:418, srow:6742216 |
| 27710 | chr4 | 141489120 | 141489122 | phastConsElements100way | lod=31 | score:333, srow:6742217 |
| 27710 | chr4 | 141489124 | 141489138 | phastConsElements100way | lod=135 | score:479, srow:6742218 |
| 27710 | chr4 | 141489142 | 141489146 | phastConsElements100way | lod=15 | score:262, srow:6742219 |
| 27710 | chr4 | 141487963 | 141489962 | cpgShore | — | values(x.gr)[overs$srow, ]:36418 |
- Previous
- Page 2 of 2
- 9 of 34 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27710 | cellmeth_recounts | PrEC: 7, LNCaP: 30, DU145: 15 |  |
| 27710 | cellexp | id=ENSG00000109424, name=UCP1, PrEC=1, str=4, LNCaP=1, str=0, DU145=3, str=1 |  |
| 27710 | tcgameth | site:cg01283834, B=0.2, L=0.63, H=0.56 |  |
| 27710 | tcgameth | site:cg26004759, B=0.24, L=0.62, H=0.58 |  |
| 27710 | tcgaexp | gene=UCP1, entrez=7350, pos=chr4:141481050-141489959(-), B=0, L=1, M=0, H=1 |  |
| 27710 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |