DMR 28342 chr5:172659001-172659750 (750bp)

DMR Stats
Positionchr5:172659001-172659750 (View on UCSC)
Width750bp
Genomic Context3' end
Nearest GenesNKX2-5 (0bp away)
ANODEV p-value2.08658349858e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28342 NKX2-5 23471 uc003mcm.2 chr5 172659107 172662315 - 644 85.87 0.73 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc010jjt.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc011dfe.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28342 chr5 172659670 172659670 cosmic COSM591405 srow:992693
28342 chr5 172659671 172659671 cosmic COSM295285 srow:992694
28342 chr5 172659690 172659690 cosmic COSM1286609 srow:992695
28342 chr5 172659704 172659704 cosmic COSM1259161 srow:992696
28342 chr5 172659091 172659102 phastConsElements100way lod=23 score:304, srow:7459419
28342 chr5 172659109 172659131 phastConsElements100way lod=83 score:431, srow:7459420
28342 chr5 172659148 172659185 phastConsElements100way lod=180 score:508, srow:7459421
28342 chr5 172659196 172659197 phastConsElements100way lod=16 score:268, srow:7459422
28342 chr5 172659214 172659224 phastConsElements100way lod=29 score:327, srow:7459423
28342 chr5 172659229 172659236 phastConsElements100way lod=26 score:316, srow:7459424
28342 chr5 172659333 172659335 phastConsElements100way lod=16 score:268, srow:7459425
28342 chr5 172659536 172659538 phastConsElements100way lod=14 score:255, srow:7459426
28342 chr5 172659555 172659586 phastConsElements100way lod=170 score:502, srow:7459427
28342 chr5 172659588 172659594 phastConsElements100way lod=70 score:414, srow:7459428
28342 chr5 172659597 172659604 phastConsElements100way lod=70 score:414, srow:7459429
28342 chr5 172659606 172659607 phastConsElements100way lod=23 score:304, srow:7459430
28342 chr5 172659609 172659628 phastConsElements100way lod=86 score:434, srow:7459431
28342 chr5 172659630 172659640 phastConsElements100way lod=82 score:430, srow:7459432
28342 chr5 172659642 172659655 phastConsElements100way lod=119 score:467, srow:7459433
28342 chr5 172659657 172659687 phastConsElements100way lod=221 score:528, srow:7459434
28342 chr5 172659690 172659690 phastConsElements100way lod=16 score:268, srow:7459435
28342 chr5 172659693 172659693 phastConsElements100way lod=17 score:274, srow:7459436
28342 chr5 172659696 172659696 phastConsElements100way lod=20 score:290, srow:7459437
28342 chr5 172659699 172659705 phastConsElements100way lod=46 score:373, srow:7459438
28342 chr5 172659708 172659712 phastConsElements100way lod=20 score:290, srow:7459439

Omics Overlaps

Dmrid Omic Set Data Plot
28342 cellmeth_recounts PrEC: 11, LNCaP: 210, DU145: 44
28342 cellmeth_diffreps_PrECvsLNCaP A=9, B=343, Length=1160, Event=Up, log2FC=5.25, padj=0
28342 cellmeth_diffreps_PrECvsDU145 A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=1.02756470669418e-05
28342 cellmeth_diffreps_LNCaPvsDU145 A=393.41, B=42.09, Length=1400, Event=Down, log2FC=-3.22, padj=0
28342 cellexp id=ENSG00000183072, name=NKX2-5, PrEC=0, str=0, LNCaP=1, str=0, DU145=41, str=76
28342 tcgameth site:cg07798980, B=0.48, L=0.62, H=0.6
28342 tcgameth site:cg19923650, B=0.08, L=0.31, H=0.42
28342 tcgaexp gene=NKX2-5, entrez=1482, pos=chr5:172659107-172662315(-), B=1, L=0, M=5, H=27