DMR 30191 chr9:116751-117150 (400bp)
| DMR Stats | |
|---|---|
| Position | chr9:116751-117150 (View on UCSC) |
| Width | 400bp |
| Genomic Context | 3' end |
| Nearest Genes | FOXD4 (0bp away) |
| ANODEV p-value | 0.000252511502661 |
| Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30191 | FOXD4 | 29107 | uc003zfz.4 | chr9 | 116231 | 118417 | - | 400 | 100.0 | 0.06 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30191 | chr9 | 117150 | 117163 | phastConsElements100way | lod=96 | score:445, srow:9110733 |
| 30191 | chr9 | 116702 | 118177 | cpgIsland | CpG: 124 | length:1476, cpgNum:124, gcNum:996, perCpg:16.8, perGc:67.5, obsExp:0.74, srow:26289 |
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- 2 of 27 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30191 | cellmeth_recounts | PrEC: 2, LNCaP: 96, DU145: 5 |  |
| 30191 | cellmeth_diffreps_PrECvsLNCaP | A=3, B=87, Length=760, Event=Up, log2FC=4.86, padj=0 |  |
| 30191 | cellmeth_diffreps_LNCaPvsDU145 | A=93.01, B=4.68, Length=660, Event=Down, log2FC=-4.31, padj=0 |  |
| 30191 | cellexp | id=ENSG00000170122, name=FOXD4, PrEC=3, str=21, LNCaP=465, str=274, DU145=47, str=57 |  |
| 30191 | tcgaexp | gene=FOXD4, entrez=2298, pos=chr9:116231-118417(-), B=18, L=37, M=34, H=39 |  |