DMR 30192 chr9:117501-118300 (800bp)
| DMR Stats | |
|---|---|
| Position | chr9:117501-118300 (View on UCSC) |
| Width | 800bp |
| Genomic Context | promoter |
| Nearest Genes | FOXD4 (0bp away) |
| ANODEV p-value | 1.52478218464e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30192 | FOXD4 | 29107 | uc003zfz.4 | chr9 | 116231 | 118417 | - | 800 | 100.0 | 0.06 | 0 | 47.88 | E1 (100) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30192 | chr9 | 117776 | 117789 | tfbsConsSites | V$GATA1_03 | score:866, zScore:2.06, srow:5283227 |
| 30192 | chr9 | 117506 | 117506 | cosmic | COSM455225 | srow:1177958 |
| 30192 | chr9 | 117506 | 117506 | cosmic | COSM455226 | srow:1177959 |
| 30192 | chr9 | 117572 | 117572 | cosmic | COSM1104432 | srow:1177960 |
| 30192 | chr9 | 117572 | 117572 | cosmic | COSM1104433 | srow:1177961 |
| 30192 | chr9 | 117574 | 117574 | cosmic | COSM1459146 | srow:1177962 |
| 30192 | chr9 | 117574 | 117574 | cosmic | COSM1459147 | srow:1177963 |
| 30192 | chr9 | 117579 | 117579 | cosmic | COSM1330821 | srow:1177964 |
| 30192 | chr9 | 117579 | 117579 | cosmic | COSM1330822 | srow:1177965 |
| 30192 | chr9 | 117625 | 117625 | cosmic | COSM1459148 | srow:1177966 |
| 30192 | chr9 | 117625 | 117625 | cosmic | COSM1459149 | srow:1177967 |
| 30192 | chr9 | 117696 | 117696 | cosmic | COSM1600176 | srow:1177968 |
| 30192 | chr9 | 117745 | 117745 | cosmic | COSM751920 | srow:1177969 |
| 30192 | chr9 | 117745 | 117745 | cosmic | COSM751921 | srow:1177970 |
| 30192 | chr9 | 117789 | 117789 | cosmic | COSM244581 | srow:1177971 |
| 30192 | chr9 | 117796 | 117796 | cosmic | COSM1285039 | srow:1177972 |
| 30192 | chr9 | 117796 | 117796 | cosmic | COSM1285040 | srow:1177973 |
| 30192 | chr9 | 117814 | 117814 | cosmic | COSM1104445 | srow:1177974 |
| 30192 | chr9 | 117814 | 117814 | cosmic | COSM1104446 | srow:1177975 |
| 30192 | chr9 | 117873 | 117873 | cosmic | COSM1285037 | srow:1177976 |
| 30192 | chr9 | 117873 | 117873 | cosmic | COSM1285038 | srow:1177977 |
| 30192 | chr9 | 117910 | 117910 | cosmic | COSM1314400 | srow:1177978 |
| 30192 | chr9 | 117910 | 117910 | cosmic | COSM1314401 | srow:1177979 |
| 30192 | chr9 | 117920 | 117920 | cosmic | COSM1104471 | srow:1177980 |
| 30192 | chr9 | 117920 | 117920 | cosmic | COSM1104472 | srow:1177981 |
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30192 | cellmeth_recounts | PrEC: 24, LNCaP: 193, DU145: 15 |  |
| 30192 | cellmeth_diffreps_PrECvsLNCaP | A=2, B=89, Length=760, Event=Up, log2FC=5.48, padj=0 |  |
| 30192 | cellmeth_diffreps_PrECvsLNCaP | A=24, B=56, Length=260, Event=Up, log2FC=1.22, padj=0.008870036705605 |  |
| 30192 | cellmeth_diffreps_PrECvsDU145 | A=25, B=4, Length=340, Event=Down, log2FC=-2.64, padj=0.00160404022456948 |  |
| 30192 | cellmeth_diffreps_PrECvsDU145 | A=28, B=3, Length=320, Event=Down, log2FC=-3.22, padj=8.63344400735211e-05 |  |
| 30192 | cellmeth_diffreps_LNCaPvsDU145 | A=192.43, B=12.16, Length=1280, Event=Down, log2FC=-3.98, padj=0 |  |
| 30192 | cellexp | id=ENSG00000170122, name=FOXD4, PrEC=3, str=21, LNCaP=465, str=274, DU145=47, str=57 |  |
| 30192 | tcgameth | site:cg18016181, B=0.24, L=0.58, H=0.59 |  |
| 30192 | tcgameth | site:cg25391162, B=0.5, L=0.64, H=0.64 |  |
| 30192 | tcgaexp | gene=FOXD4, entrez=2298, pos=chr9:116231-118417(-), B=18, L=37, M=34, H=39 |  |