DMR 30218 chr9:6412301-6412850 (550bp)

DMR Stats
Positionchr9:6412301-6412850 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesUHRF2 (300bp away)
ANODEV p-value7.36160539934e-10
FrequenciesBenign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30218 chr9 6412777 6413361 wgEncodeRegTfbsClusteredV3 FOXM1 score:617, expCount:1, expNums:90, expScores:211, srow:4120180
30218 chr9 6412793 6413072 wgEncodeRegTfbsClusteredV3 BCL11A score:141, expCount:1, expNums:82, expScores:141, srow:4120181
30218 chr9 6412793 6413139 wgEncodeRegTfbsClusteredV3 EGR1 score:461, expCount:3, expNums:87,138,216, expScores:461,150,228, srow:4120182
30218 chr9 6412810 6413099 wgEncodeRegTfbsClusteredV3 MEF2A score:177, expCount:1, expNums:93, expScores:177, srow:4120183
30218 chr9 6412816 6413008 wgEncodeRegTfbsClusteredV3 NFIC score:453, expCount:1, expNums:97, expScores:453, srow:4120184
30218 chr9 6412718 6412727 tfbsConsSites V$USF_Q6 score:952, zScore:2.58, srow:5297835
30218 chr9 6412772 6412792 tfbsConsSites V$STAT3_01 score:748, zScore:1.66, srow:5297836
30218 chr9 6412792 6412796 phastConsElements100way lod=16 score:268, srow:9133871
30218 chr9 6412354 6414097 cpgIsland CpG: 178 length:1744, cpgNum:178, gcNum:1144, perCpg:20.4, perGc:65.6, obsExp:0.95, srow:26334
30218 chr9 6410354 6412353 cpgShore — values(x.gr)[overs$srow, ]:47658

Omics Overlaps

Dmrid Omic Set Data Plot
30218 cellmeth_recounts PrEC: 39, LNCaP: 302, DU145: 35
30218 cellmeth_diffreps_PrECvsLNCaP A=48, B=233, Length=640, Event=Up, log2FC=2.28, padj=0
30218 cellmeth_diffreps_PrECvsDU145 A=58, B=17, Length=380, Event=Down, log2FC=-1.77, padj=7.26627788439946e-05
30218 cellmeth_diffreps_LNCaPvsDU145 A=264.05, B=25.26, Length=740, Event=Down, log2FC=-3.39, padj=0
30218 tcgameth site:cg24119045, B=0.08, L=0.27, H=0.23