DMR 30507 chr9:112810151-112811000 (850bp)
| DMR Stats | |
|---|---|
| Position | chr9:112810151-112811000 (View on UCSC) |
| Width | 850bp |
| Genomic Context | promoter |
| Nearest Genes | PALM2-AKAP2, AKAP2 (0bp away) |
| ANODEV p-value | 3.75652071739e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30507 | PALM2-AKAP2 | 29903 | uc004bei.2 | chr9 | 112542577 | 112900819 | + | 850 | 100.0 | 0.27 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) | 0.0 |
| 30507 | PALM2-AKAP2 | 29903 | uc004bej.4 | chr9 | 112542577 | 112934791 | + | 850 | 100.0 | 0.47 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 30507 | PALM2-AKAP2 | 29903 | uc004bek.4 | chr9 | 112542577 | 112934791 | + | 850 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 30507 | PALM2-AKAP2 | 29903 | uc004bel.1 | chr9 | 112629647 | 112900819 | + | 850 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) | 0.0 |
| 30507 | AKAP2 | 29903 | uc004bem.3 | chr9 | 112810878 | 112934791 | + | 123 | 14.47 | 0.09 | 0 | 100.0 | E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 30507 | AKAP2 | 29903 | uc011lwi.2 | chr9 | 112810878 | 112934791 | + | 123 | 14.47 | 0.07 | 0 | 100.0 | E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30507 | chr9 | 112810833 | 112811096 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:165, expCount:1, expNums:100, expScores:165, srow:4211612 |
| 30507 | chr9 | 112810850 | 112811205 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:142, expCount:1, expNums:260, expScores:142, srow:4211613 |
| 30507 | chr9 | 112810864 | 112811219 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:328, expCount:1, expNums:158, expScores:328, srow:4211614 |
| 30507 | chr9 | 112810919 | 112811174 | wgEncodeRegTfbsClusteredV3 | HDAC2 | score:142, expCount:1, expNums:141, expScores:142, srow:4211615 |
| 30507 | chr9 | 112810150 | 112810164 | tfbsConsSites | V$ISRE_01 | score:789, zScore:1.83, srow:5454670 |
| 30507 | chr9 | 112810224 | 112810245 | tfbsConsSites | V$HEN1_01 | score:861, zScore:2.99, srow:5454671 |
| 30507 | chr9 | 112810826 | 112810839 | tfbsConsSites | V$RREB1_01 | score:809, zScore:1.7, srow:5454672 |
| 30507 | chr9 | 112810926 | 112810938 | tfbsConsSites | V$SP1_Q6 | score:944, zScore:2.29, srow:5454673 |
| 30507 | chr9 | 112810933 | 112810942 | tfbsConsSites | V$NFKAPPAB50_01 | score:901, zScore:2.28, srow:5454674 |
| 30507 | chr9 | 112810945 | 112810962 | tfbsConsSites | V$AHR_01 | score:765, zScore:1.67, srow:5454675 |
| 30507 | chr9 | 112810987 | 112811004 | tfbsConsSites | V$AP4_01 | score:811, zScore:1.66, srow:5454676 |
| 30507 | chr9 | 112810144 | 112810153 | phastConsElements100way | lod=50 | score:381, srow:9411240 |
| 30507 | chr9 | 112810160 | 112810175 | phastConsElements100way | lod=67 | score:410, srow:9411241 |
| 30507 | chr9 | 112810183 | 112810191 | phastConsElements100way | lod=18 | score:280, srow:9411242 |
| 30507 | chr9 | 112810195 | 112810200 | phastConsElements100way | lod=19 | score:285, srow:9411243 |
| 30507 | chr9 | 112810234 | 112810238 | phastConsElements100way | lod=17 | score:274, srow:9411244 |
| 30507 | chr9 | 112810255 | 112810264 | phastConsElements100way | lod=17 | score:274, srow:9411245 |
| 30507 | chr9 | 112810856 | 112810858 | phastConsElements100way | lod=15 | score:262, srow:9411246 |
| 30507 | chr9 | 112810899 | 112810903 | phastConsElements100way | lod=13 | score:247, srow:9411247 |
| 30507 | chr9 | 112810907 | 112810914 | phastConsElements100way | lod=25 | score:312, srow:9411248 |
| 30507 | chr9 | 112810929 | 112810938 | phastConsElements100way | lod=16 | score:268, srow:9411249 |
| 30507 | chr9 | 112810859 | 112811128 | cpgIsland | CpG: 29 | length:270, cpgNum:29, gcNum:212, perCpg:21.5, perGc:78.5, obsExp:0.7, srow:26890 |
| 30507 | chr9 | 112808859 | 112810858 | cpgShore | — | values(x.gr)[overs$srow, ]:48706 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30507 | cellmeth_recounts | PrEC: 1, LNCaP: 37, DU145: 15 |  |
| 30507 | cellmeth_diffreps_PrECvsLNCaP | A=1, B=21, Length=340, Event=Up, log2FC=4.39, padj=0.000108416961794953 |  |
| 30507 | cellexp | id=ENSG00000157654, name=PALM2-AKAP2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 30507 | cellexp | id=ENSG00000241978, name=AKAP2, PrEC=37, str=9, LNCaP=0, str=0, DU145=49, str=13 |  |
| 30507 | tcgameth | site:cg15083233, B=0.27, L=0.7, H=0.68 |  |
| 30507 | tcgameth | site:cg26288249, B=0.09, L=0.31, H=0.31 |  |
| 30507 | tcgaexp | gene=AKAP2, entrez=11217, pos=chr9:112810878-112934791(+), B=2313, L=1240, M=1343, H=1913 |  |
| 30507 | tcgaexp | gene=PALM2-AKAP2, entrez=445815, pos=chr9:112542577-112934791(+), B=2150, L=1511, M=1577, H=2237 |  |