DMR 30688 chr9:133760901-133761200 (300bp)
| DMR Stats | |
|---|---|
| Position | chr9:133760901-133761200 (View on UCSC) |
| Width | 300bp |
| Genomic Context | exon |
| Nearest Genes | ABL1 (0bp away) |
| ANODEV p-value | 0.00268465311702 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30688 | ABL1 | 30188 | uc004bzv.3 | chr9 | 133589268 | 133763062 | + | 300 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100) | 0.0 |
| 30688 | ABL1 | 30188 | uc004bzw.3 | chr9 | 133710831 | 133763062 | + | 300 | 100.0 | 1.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30688 | chr9 | 133761011 | 133761036 | phastConsElements100way | lod=305 | score:560, srow:9503365 |
| 30688 | chr9 | 133761038 | 133761051 | phastConsElements100way | lod=200 | score:518, srow:9503366 |
| 30688 | chr9 | 133761053 | 133761057 | phastConsElements100way | lod=78 | score:425, srow:9503367 |
| 30688 | chr9 | 133761059 | 133761060 | phastConsElements100way | lod=41 | score:361, srow:9503368 |
| 30688 | chr9 | 133761062 | 133761081 | phastConsElements100way | lod=220 | score:527, srow:9503369 |
| 30688 | chr9 | 133760880 | 133762879 | cpgShore | — | values(x.gr)[overs$srow, ]:49223 |
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- 6 of 31 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30688 | cellmeth_recounts | PrEC: 9, LNCaP: 4, DU145: 26 |  |
| 30688 | cellmeth_diffreps_PrECvsLNCaP | A=183, B=10, Length=560, Event=Down, log2FC=-4.19, padj=0 |  |
| 30688 | cellmeth_diffreps_PrECvsDU145 | A=182, B=33, Length=520, Event=Down, log2FC=-2.46, padj=0 |  |
| 30688 | cellmeth_diffreps_LNCaPvsDU145 | A=1.07, B=17.77, Length=220, Event=Up, log2FC=4.06, padj=0.00280247687576882 |  |
| 30688 | cellexp | id=ENSG00000097007, name=ABL1, PrEC=7889, str=7687, LNCaP=6067, str=4403, DU145=10654, str=9807 |  |
| 30688 | tcgaexp | gene=ABL1, entrez=25, pos=chr9:133589268-133763062(+), B=7570, L=7395, M=7230, H=8016 |  |