DMR 33271 chr15:68112401-68112950 (550bp)
| DMR Stats | |
|---|---|
| Position | chr15:68112401-68112950 (View on UCSC) |
| Width | 550bp |
| Genomic Context | promoter |
| Nearest Genes | SKOR1 (0bp away) |
| ANODEV p-value | 1.51762231353e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33271 | SKOR1 | 9887 | uc031qsn.1 | chr15 | 68112042 | 68126174 | + | 550 | 100.0 | 1.3 | 0 | 25.64 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33271 | chr15 | 68112556 | 68112565 | tfbsConsSites | V$LHX3_01 | score:938, zScore:2.32, srow:1778811 |
| 33271 | chr15 | 68112637 | 68112647 | tfbsConsSites | V$CP2_01 | score:897, zScore:2.03, srow:1778812 |
| 33271 | chr15 | 68112296 | 68112609 | phastConsElements100way | lod=2624 | score:773, srow:3084558 |
| 33271 | chr15 | 68112612 | 68112640 | phastConsElements100way | lod=95 | score:444, srow:3084559 |
| 33271 | chr15 | 68111242 | 68113241 | cpgShore | — | values(x.gr)[overs$srow, ]:14734 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33271 | cellmeth_recounts | PrEC: 5, LNCaP: 336, DU145: 5 |  |
| 33271 | cellmeth_diffreps_PrECvsLNCaP | A=8, B=393, Length=1160, Event=Up, log2FC=5.62, padj=0 |  |
| 33271 | cellmeth_diffreps_LNCaPvsDU145 | A=486.42, B=6.55, Length=1700, Event=Down, log2FC=-6.22, padj=0 |  |
| 33271 | cellexp | id=ENSG00000188779, name=SKOR1, PrEC=5, str=5, LNCaP=24, str=6, DU145=7, str=1 |  |
| 33271 | tcgameth | site:cg00145079, B=0.42, L=0.62, H=0.61 |  |
| 33271 | tcgaexp | gene=SKOR1, entrez=390598, pos=chr15:68112042-68126174(+), B=11, L=10, M=9, H=10 |  |