DMR 33900 chr17:1131501-1132200 (700bp)

DMR Stats
Positionchr17:1131501-1132200 (View on UCSC)
Width700bp
Genomic Contextintergenic
Nearest GenesABR (40884bp away)
ANODEV p-value7.36160539934e-10
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
33900 chr17 1132088 1132111 tfbsConsSites V$STAT5A_02 score:769, zScore:2.11, srow:2058514
33900 chr17 1132141 1132158 tfbsConsSites V$AHR_01 score:776, zScore:1.86, srow:2058515
33900 chr17 1132147 1132156 tfbsConsSites V$AP4_Q6 score:940, zScore:1.7, srow:2058516
33900 chr17 1132160 1132171 tfbsConsSites V$NFKB_C score:845, zScore:1.8, srow:2058517
33900 chr17 1131759 1131761 phastConsElements100way lod=14 score:255, srow:3522484
33900 chr17 1132047 1132050 phastConsElements100way lod=15 score:262, srow:3522485
33900 chr17 1132076 1132076 phastConsElements100way lod=12 score:240, srow:3522486
33900 chr17 1132082 1132090 phastConsElements100way lod=50 score:381, srow:3522487
33900 chr17 1132092 1132102 phastConsElements100way lod=46 score:373, srow:3522488
33900 chr17 1132104 1132111 phastConsElements100way lod=70 score:414, srow:3522489
33900 chr17 1132113 1132144 phastConsElements100way lod=143 score:485, srow:3522490
33900 chr17 1132146 1132156 phastConsElements100way lod=87 score:436, srow:3522491
33900 chr17 1132160 1132170 phastConsElements100way lod=49 score:379, srow:3522492
33900 chr17 1132176 1132177 phastConsElements100way lod=17 score:274, srow:3522493
33900 chr17 1132193 1132198 phastConsElements100way lod=20 score:290, srow:3522494
33900 chr17 1131878 1133367 cpgIsland CpG: 175 length:1490, cpgNum:175, gcNum:1013, perCpg:23.5, perGc:68, obsExp:1.02, srow:9917
33900 chr17 1129878 1131877 cpgShore — values(x.gr)[overs$srow, ]:18099

Omics Overlaps

Dmrid Omic Set Data Plot
33900 cellmeth_recounts PrEC: 11, LNCaP: 1246, DU145: 10
33900 cellmeth_diffreps_PrECvsLNCaP A=26, B=1341, Length=1680, Event=Up, log2FC=5.69, padj=0
33900 cellmeth_diffreps_LNCaPvsDU145 A=1436.8, B=17.77, Length=1760, Event=Down, log2FC=-6.34, padj=0
33900 cellexp id=ENSG00000159842, name=ABR, PrEC=5958, str=5449, LNCaP=7075, str=4383, DU145=7236, str=5886
33900 tcgameth site:cg11424456, B=0.11, L=0.57, H=0.5
33900 tcgameth site:cg18331855, B=0.21, L=0.69, H=0.66
33900 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
33900 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
33900 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
33900 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
33900 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
33900 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
33900 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
33900 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
33900 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
33900 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
33900 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
33900 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
33900 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
33900 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4