DMR 34060 chr17:17626301-17628750 (2450bp)

DMR Stats
Positionchr17:17626301-17628750 (View on UCSC)
Width2450bp
Genomic Contextexon
Nearest GenesRAI1 (0bp away)
ANODEV p-value7.14529637478e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34060 RAI1 12265 uc002grm.3 chr17 17584787 17714765 + 2450 100.0 0.12 0 0.0 E1 (0), I1 (42.49), E2 (5.39), I2 (52.16), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34060 chr17 17628416 17628920 wgEncodeRegTfbsClusteredV3 POLR2A score:501, expCount:4, expNums:206,461,632,633, expScores:148,225,501,255, srow:1645159
34060 chr17 17628507 17628810 wgEncodeRegTfbsClusteredV3 FOXP2 score:173, expCount:1, expNums:251, expScores:173, srow:1645160
34060 chr17 17628568 17628757 wgEncodeRegTfbsClusteredV3 MYC score:108, expCount:1, expNums:617, expScores:108, srow:1645161
34060 chr17 17626373 17626385 tfbsConsSites V$CHOP_01 score:833, zScore:1.78, srow:2106579
34060 chr17 17626430 17626440 tfbsConsSites V$FOXO4_01 score:909, zScore:1.68, srow:2106580
34060 chr17 17626525 17626536 tfbsConsSites V$EGR1_01 score:955, zScore:3.74, srow:2106581
34060 chr17 17626525 17626536 tfbsConsSites V$EGR2_01 score:965, zScore:3.84, srow:2106582
34060 chr17 17626525 17626536 tfbsConsSites V$EGR3_01 score:974, zScore:3.93, srow:2106583
34060 chr17 17626525 17626536 tfbsConsSites V$NGFIC_01 score:925, zScore:3.24, srow:2106584
34060 chr17 17626559 17626574 tfbsConsSites V$FREAC2_01 score:882, zScore:2.95, srow:2106585
34060 chr17 17626561 17626572 tfbsConsSites V$CDP_01 score:811, zScore:2.36, srow:2106586
34060 chr17 17626562 17626573 tfbsConsSites V$HFH1_01 score:901, zScore:2.36, srow:2106587
34060 chr17 17626563 17626572 tfbsConsSites V$FOXO1_01 score:952, zScore:1.72, srow:2106588
34060 chr17 17626564 17626574 tfbsConsSites V$FOXO4_01 score:934, zScore:2.09, srow:2106589
34060 chr17 17626565 17626574 tfbsConsSites V$SOX5_01 score:957, zScore:2.24, srow:2106590
34060 chr17 17626675 17626698 tfbsConsSites V$BRACH_01 score:705, zScore:2.21, srow:2106591
34060 chr17 17626746 17626757 tfbsConsSites V$PAX4_03 score:906, zScore:1.67, srow:2106592
34060 chr17 17626827 17626838 tfbsConsSites V$EGR2_01 score:848, zScore:2.01, srow:2106593
34060 chr17 17626827 17626838 tfbsConsSites V$EGR3_01 score:840, zScore:1.97, srow:2106594
34060 chr17 17626949 17626961 tfbsConsSites V$PAX3_01 score:798, zScore:1.71, srow:2106595
34060 chr17 17627002 17627011 tfbsConsSites V$SP1_01 score:929, zScore:1.75, srow:2106596
34060 chr17 17627005 17627017 tfbsConsSites V$MAZR_01 score:871, zScore:1.89, srow:2106597
34060 chr17 17627023 17627041 tfbsConsSites V$PAX2_01 score:775, zScore:1.8, srow:2106598
34060 chr17 17627036 17627051 tfbsConsSites V$AHRARNT_01 score:837, zScore:1.82, srow:2106599
34060 chr17 17627057 17627086 tfbsConsSites V$HOX13_01 score:738, zScore:2.27, srow:2106600

Omics Overlaps

Dmrid Omic Set Data Plot
34060 cellmeth_recounts PrEC: 80, LNCaP: 4849, DU145: 61
34060 cellmeth_diffreps_PrECvsLNCaP A=583, B=5143, Length=3860, Event=Up, log2FC=3.14, padj=0
34060 cellmeth_diffreps_PrECvsDU145 A=550, B=23, Length=1340, Event=Down, log2FC=-4.58, padj=0
34060 cellmeth_diffreps_LNCaPvsDU145 A=5498.1, B=59.87, Length=3880, Event=Down, log2FC=-6.52, padj=0
34060 cellexp id=ENSG00000108557, name=RAI1, PrEC=8222, str=4496, LNCaP=5636, str=3754, DU145=1644, str=1097
34060 tcgameth site:cg00073010, B=0.15, L=0.59, H=0.54
34060 tcgameth site:cg13000649, B=0.12, L=0.54, H=0.48
34060 tcgameth site:cg19447962, B=0.35, L=0.78, H=0.71
34060 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
34060 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
34060 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
34060 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
34060 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
34060 tcgaexp gene=RAI1, entrez=10743, pos=chr17:17584787-17714765(+), B=3085, L=2862, M=2789, H=2953
34060 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
34060 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
34060 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
34060 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
34060 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
34060 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
34060 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
34060 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
34060 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
34060 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4