DMR 35033 chr19:17403001-17403500 (500bp)

DMR Stats
Positionchr19:17403001-17403500 (View on UCSC)
Width500bp
Genomic Context3' end
Nearest GenesABHD8 (0bp away)
ANODEV p-value0.0111119314747
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35033 ABHD8 14693 uc002ngb.4 chr19 17402940 17414282 - 500 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35033 chr19 17403301 17403754 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:1979473
35033 chr19 17403301 17403862 wgEncodeRegTfbsClusteredV3 TBP score:434, expCount:2, expNums:359,412, expScores:434,195, srow:1979474
35033 chr19 17403317 17403974 wgEncodeRegTfbsClusteredV3 SIN3A score:241, expCount:2, expNums:312,357, expScores:174,241, srow:1979475
35033 chr19 17403340 17403709 wgEncodeRegTfbsClusteredV3 CHD2 score:139, expCount:1, expNums:380, expScores:139, srow:1979476
35033 chr19 17403349 17403872 wgEncodeRegTfbsClusteredV3 HDAC1 score:171, expCount:1, expNums:26, expScores:171, srow:1979477
35033 chr19 17403373 17404011 wgEncodeRegTfbsClusteredV3 CBX3 score:292, expCount:1, expNums:211, expScores:282, srow:1979478
35033 chr19 17403390 17403789 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:159, expCount:1, expNums:543, expScores:159, srow:1979479
35033 chr19 17403395 17403994 wgEncodeRegTfbsClusteredV3 MYC score:813, expCount:16, expNums:347,382,485,486,487,488,489,490,560,561,575,600,617,620,623,626, expScores:248,233,168,217,648,261,813,250,312,261,455,125,114,201,242,433, srow:1979480
35033 chr19 17403396 17403759 wgEncodeRegTfbsClusteredV3 GTF2F1 score:143, expCount:1, expNums:349, expScores:143, srow:1979481
35033 chr19 17403420 17403929 wgEncodeRegTfbsClusteredV3 SAP30 score:164, expCount:1, expNums:34, expScores:164, srow:1979482
35033 chr19 17403421 17403796 wgEncodeRegTfbsClusteredV3 ZKSCAN1 score:160, expCount:1, expNums:418, expScores:160, srow:1979483
35033 chr19 17403438 17403925 wgEncodeRegTfbsClusteredV3 MAZ score:417, expCount:2, expNums:396,512, expScores:247,417, srow:1979484
35033 chr19 17403452 17404047 wgEncodeRegTfbsClusteredV3 ZNF263 score:296, expCount:1, expNums:368, expScores:296, srow:1979485
35033 chr19 17403460 17403950 wgEncodeRegTfbsClusteredV3 MXI1 score:335, expCount:4, expNums:298,353,397,513, expScores:335,194,190,145, srow:1979486
35033 chr19 17403471 17403774 wgEncodeRegTfbsClusteredV3 KDM5A score:113, expCount:1, expNums:7, expScores:113, srow:1979487
35033 chr19 17403472 17403721 wgEncodeRegTfbsClusteredV3 TEAD4 score:445, expCount:1, expNums:160, expScores:445, srow:1979488
35033 chr19 17403351 17403363 tfbsConsSites V$SP1_Q6 score:944, zScore:2.29, srow:2442940
35033 chr19 17403021 17403023 phastConsElements100way lod=12 score:240, srow:4207094
35033 chr19 17403031 17403039 phastConsElements100way lod=19 score:285, srow:4207095
35033 chr19 17403124 17403151 phastConsElements100way lod=64 score:405, srow:4207096
35033 chr19 17403202 17403213 phastConsElements100way lod=37 score:351, srow:4207097
35033 chr19 17403333 17403335 phastConsElements100way lod=21 score:295, srow:4207098
35033 chr19 17403472 17403481 phastConsElements100way lod=41 score:361, srow:4207099
35033 chr19 17403495 17403496 phastConsElements100way lod=21 score:295, srow:4207100
35033 chr19 17403499 17403502 phastConsElements100way lod=14 score:255, srow:4207101

Omics Overlaps

Dmrid Omic Set Data Plot
35033 cellmeth_recounts PrEC: 127, LNCaP: 48, DU145: 12
35033 cellmeth_diffreps_PrECvsLNCaP A=223, B=43, Length=940, Event=Down, log2FC=-2.37, padj=0
35033 cellmeth_diffreps_PrECvsDU145 A=223, B=14, Length=1000, Event=Down, log2FC=-3.99, padj=0
35033 cellmeth_diffreps_LNCaPvsDU145 A=23.52, B=3.74, Length=200, Event=Down, log2FC=-2.65, padj=0.00630962522793068
35033 cellexp id=ENSG00000127220, name=ABHD8, PrEC=711, str=407, LNCaP=1584, str=902, DU145=1534, str=752
35033 cellexp id=ENSG00000130312, name=MRPL34, PrEC=2286, str=1036, LNCaP=3153, str=2855, DU145=1352, str=1180
35033 tcgameth site:cg12247222, B=0.45, L=0.53, H=0.54
35033 tcgameth site:cg18888655, B=0.55, L=0.58, H=0.61
35033 tcgaexp gene=ABHD8, entrez=79575, pos=chr19:17402940-17414282(-), B=1000, L=927, M=824, H=711