DMR 36506 chr1:1372701-1372850 (150bp)

DMR Stats
Positionchr1:1372701-1372850 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesVWA1 (0bp away)
ANODEV p-value0.018844004522
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36506 VWA1 69 uc001afr.3 chr1 1370903 1378262 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0.67), E2 (99.33), I2 (0), E3 (0) 0.0
36506 VWA1 69 uc001afs.3 chr1 1370903 1378262 + 150 100.0 0.02 0 0.0 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36506 chr1 1372831 1372835 phastConsElements100way lod=54 score:388, srow:6418
36506 chr1 1372843 1372847 phastConsElements100way lod=28 score:323, srow:6419
36506 chr1 1372850 1372850 phastConsElements100way lod=14 score:255, srow:6420
36506 chr1 1371450 1374461 cpgShore — values(x.gr)[overs$srow, ]:147

Omics Overlaps

Dmrid Omic Set Data Plot
36506 cellmeth_recounts PrEC: 15, LNCaP: 183, DU145: 1
36506 cellmeth_diffreps_PrECvsLNCaP A=68, B=433, Length=1120, Event=Up, log2FC=2.67, padj=0
36506 cellmeth_diffreps_PrECvsDU145 A=67, B=7, Length=620, Event=Down, log2FC=-3.26, padj=8.97894501171479e-12
36506 cellmeth_diffreps_LNCaPvsDU145 A=457.55, B=14.97, Length=1040, Event=Down, log2FC=-4.93, padj=0
36506 cellexp id=ENSG00000179403, name=VWA1, PrEC=3375, str=1848, LNCaP=6035, str=4905, DU145=1828, str=1228
36506 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36506 tcgaexp gene=VWA1, entrez=64856, pos=chr1:1370903-1378262(+), B=16879, L=17310, M=14366, H=11700
36506 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305