DMR 36507 chr1:1397851-1398100 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:1397851-1398100 (View on UCSC) |
| Width | 250bp |
| Genomic Context | exon |
| Nearest Genes | ATAD3C (0bp away) |
| ANODEV p-value | 0.000190528774031 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36507 | ATAD3C | 70 | uc001aft.2 | chr1 | 1385069 | 1405538 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (51.6), E11 (43.6), I11 (5.2), E12 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36507 | chr1 | 1398032 | 1398039 | phastConsElements100way | lod=59 | score:397, srow:6591 |
| 36507 | chr1 | 1398041 | 1398051 | phastConsElements100way | lod=154 | score:492, srow:6592 |
| 36507 | chr1 | 1398053 | 1398057 | phastConsElements100way | lod=62 | score:402, srow:6593 |
| 36507 | chr1 | 1398059 | 1398066 | phastConsElements100way | lod=105 | score:454, srow:6594 |
| 36507 | chr1 | 1398068 | 1398072 | phastConsElements100way | lod=64 | score:405, srow:6595 |
| 36507 | chr1 | 1398074 | 1398075 | phastConsElements100way | lod=35 | score:345, srow:6596 |
| 36507 | chr1 | 1398077 | 1398081 | phastConsElements100way | lod=75 | score:421, srow:6597 |
| 36507 | chr1 | 1398083 | 1398093 | phastConsElements100way | lod=169 | score:501, srow:6598 |
| 36507 | chr1 | 1396339 | 1398338 | cpgShore | — | values(x.gr)[overs$srow, ]:152 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36507 | cellmeth_recounts | PrEC: 0, LNCaP: 8, DU145: 5 |  |
| 36507 | cellexp | id=ENSG00000215915, name=ATAD3C, PrEC=99, str=36, LNCaP=39, str=33, DU145=28, str=20 |  |
| 36507 | tcgameth | site:cg24687970, B=0.34, L=0.64, H=0.62 |  |
| 36507 | tcgameth | site:cg25101405, B=0.31, L=0.62, H=0.58 |  |
| 36507 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36507 | tcgaexp | gene=ATAD3C, entrez=219293, pos=chr1:1385069-1405538(+), B=392, L=189, M=171, H=134 |  |
| 36507 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36507 | pubmed | gene=ATAD3C, G=3, GP=0, GC=3, GM=0, GPM=0, GCM=0 |  |