DMR 37019 chr1:229567951-229568300 (350bp)
| DMR Stats | |
|---|---|
| Position | chr1:229567951-229568300 (View on UCSC) |
| Width | 350bp |
| Genomic Context | 3' end |
| Nearest Genes | ACTA1 (0bp away) |
| ANODEV p-value | 0.00110964412195 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37019 | ACTA1 | 2686 | uc001htm.3 | chr1 | 229566993 | 229569843 | - | 350 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (35.14), E4 (46.29), I4 (18.86), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 12.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37019 | chr1 | 229568085 | 229568110 | phastConsElements100way | lod=361 | score:576, srow:815213 |
| 37019 | chr1 | 229568112 | 229568158 | phastConsElements100way | lod=588 | score:625, srow:815214 |
| 37019 | chr1 | 229568160 | 229568161 | phastConsElements100way | lod=29 | score:327, srow:815215 |
| 37019 | chr1 | 229568163 | 229568181 | phastConsElements100way | lod=221 | score:528, srow:815216 |
| 37019 | chr1 | 229568294 | 229568315 | phastConsElements100way | lod=237 | score:535, srow:815217 |
| 37019 | chr1 | 229567207 | 229570684 | cpgIsland | CpG: 245 | length:3478, cpgNum:245, gcNum:2129, perCpg:14.1, perGc:61.2, obsExp:0.75, srow:2326 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37019 | cellmeth_recounts | PrEC: 1, LNCaP: 47, DU145: 9 |  |
| 37019 | cellmeth_diffreps_PrECvsLNCaP | A=1, B=105, Length=1160, Event=Up, log2FC=6.71, padj=0 |  |
| 37019 | cellmeth_diffreps_LNCaPvsDU145 | A=38.49, B=5.61, Length=340, Event=Down, log2FC=-2.78, padj=3.63425783842731e-05 |  |
| 37019 | cellexp | id=ENSG00000143632, name=ACTA1, PrEC=2, str=2, LNCaP=8, str=8, DU145=3, str=3 |  |
| 37019 | tcgameth | site:cg00034468, B=0.31, L=0.37, H=0.46 |  |
| 37019 | tcgameth | site:cg04568492, B=0.03, L=0.14, H=0.15 |  |
| 37019 | tcgaexp | gene=ACTA1, entrez=58, pos=chr1:229566993-229569843(-), B=3186, L=1252, M=4671, H=2198 |  |