DMR 40936 chr16:2391101-2391850 (750bp)

DMR Stats
Positionchr16:2391101-2391850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesABCA17P (0bp away)
ANODEV p-value0.000180197983858
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40936 ABCA17P 10788 uc002cqa.1 chr16 2389291 2417125 + 750 100.0 0.16 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
40936 ABCA17P 10788 uc002cqb.1 chr16 2390923 2412667 + 750 100.0 0.09 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0) 0.0
40936 ABCA17P 10788 uc002cqc.1 chr16 2390923 2476700 + 750 100.0 0.12 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40936 chr16 2390745 2391170 wgEncodeRegTfbsClusteredV3 RCOR1 score:391, expCount:2, expNums:383,492, expScores:240,391, srow:1450895
40936 chr16 2390752 2391312 wgEncodeRegTfbsClusteredV3 REST score:337, expCount:5, expNums:59,189,248,257,274, expScores:337,173,324,193,214, srow:1450899
40936 chr16 2390756 2391275 wgEncodeRegTfbsClusteredV3 FOXM1 score:376, expCount:1, expNums:90, expScores:376, srow:1450901
40936 chr16 2390763 2391404 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:1000,580,1000, srow:1450903
40936 chr16 2390763 2391282 wgEncodeRegTfbsClusteredV3 SIN3A score:403, expCount:1, expNums:357, expScores:403, srow:1450904
40936 chr16 2390765 2391136 wgEncodeRegTfbsClusteredV3 JUN score:272, expCount:2, expNums:480,484, expScores:104,272, srow:1450905
40936 chr16 2390786 2391401 wgEncodeRegTfbsClusteredV3 MYBL2 score:226, expCount:1, expNums:186, expScores:226, srow:1450908
40936 chr16 2390808 2391211 wgEncodeRegTfbsClusteredV3 GTF2F1 score:216, expCount:1, expNums:500, expScores:216, srow:1450909
40936 chr16 2390810 2391229 wgEncodeRegTfbsClusteredV3 BCLAF1 score:243, expCount:2, expNums:84,210, expScores:243,146, srow:1450910
40936 chr16 2390810 2391176 wgEncodeRegTfbsClusteredV3 E2F4 score:273, expCount:2, expNums:494,562, expScores:273,262, srow:1450911
40936 chr16 2390820 2391169 wgEncodeRegTfbsClusteredV3 STAT5A score:240, expCount:1, expNums:237, expScores:240, srow:1450912
40936 chr16 2390833 2391208 wgEncodeRegTfbsClusteredV3 TCF7L2 score:210, expCount:1, expNums:363, expScores:210, srow:1450913
40936 chr16 2390834 2391162 wgEncodeRegTfbsClusteredV3 FOXP2 score:347, expCount:2, expNums:251,255, expScores:347,133, srow:1450914
40936 chr16 2390836 2391219 wgEncodeRegTfbsClusteredV3 USF1 score:264, expCount:6, expNums:67,69,118,161,243,265, expScores:204,245,264,189,229,155, srow:1450915
40936 chr16 2390840 2391195 wgEncodeRegTfbsClusteredV3 STAT2 score:111, expCount:1, expNums:540, expScores:111, srow:1450916
40936 chr16 2390843 2391166 wgEncodeRegTfbsClusteredV3 SMC3 score:955, expCount:4, expNums:313,408,450,535, expScores:955,954,271,510, srow:1450917
40936 chr16 2390846 2391169 wgEncodeRegTfbsClusteredV3 BACH1 score:252, expCount:1, expNums:341, expScores:252, srow:1450918
40936 chr16 2390848 2391247 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:170, expCount:1, expNums:543, expScores:170, srow:1450919
40936 chr16 2390849 2391212 wgEncodeRegTfbsClusteredV3 TEAD4 score:620, expCount:2, expNums:160,240, expScores:364,620, srow:1450920
40936 chr16 2390858 2391177 wgEncodeRegTfbsClusteredV3 POU2F2 score:221, expCount:1, expNums:106, expScores:221, srow:1450921
40936 chr16 2390862 2391297 wgEncodeRegTfbsClusteredV3 ELF1 score:482, expCount:3, expNums:50,88,217, expScores:280,482,305, srow:1450922
40936 chr16 2390877 2391144 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:12, expNums:108,149,193,231,264,280,310,355,405,448,466,529, expScores:507,1000,784,567,1000,375,391,744,360,471,1000,114, srow:1450923
40936 chr16 2390878 2391277 wgEncodeRegTfbsClusteredV3 NR2F2 score:245, expCount:1, expNums:225, expScores:245, srow:1450924
40936 chr16 2390878 2391157 wgEncodeRegTfbsClusteredV3 MAFK score:207, expCount:1, expNums:510, expScores:207, srow:1450925
40936 chr16 2390881 2391296 wgEncodeRegTfbsClusteredV3 TRIM28 score:203, expCount:1, expNums:242, expScores:203, srow:1450926

Omics Overlaps

Dmrid Omic Set Data Plot
40936 cellmeth_recounts PrEC: 27, LNCaP: 2020, DU145: 27
40936 cellmeth_diffreps_PrECvsLNCaP A=71, B=2529, Length=1560, Event=Up, log2FC=5.15, padj=0
40936 cellmeth_diffreps_LNCaPvsDU145 A=2699.34, B=26.19, Length=1480, Event=Down, log2FC=-6.69, padj=0
40936 cellexp id=ENSG00000238098, name=ABCA17P, PrEC=1, str=0, LNCaP=162, str=123, DU145=30, str=16
40936 tcgaexp gene=ABCA17P, entrez=650655, pos=chr16:2389291-2476700(+), B=11, L=8, M=9, H=9
40936 pubmed gene=ABCA3, G=200, GP=0, GC=36, GM=0, GPM=0, GCM=0
40936 pubmed gene=ABCA17P, G=2, GP=0, GC=0, GM=0, GPM=0, GCM=0