DMR 496 chr1:161953551-161953700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:161953551-161953700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | OLFML2B (0bp away) |
| ANODEV p-value | 0.0040202156497 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 496 | OLFML2B | 2049 | uc001gbt.3 | chr1 | 161952982 | 161955022 | - | 150 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 496 | OLFML2B | 2049 | uc001gbu.3 | chr1 | 161952982 | 161993644 | - | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 100.0 |
| 496 | OLFML2B | 2049 | uc010pkq.2 | chr1 | 161952982 | 161993644 | - | 150 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 496 | chr1 | 161953661 | 161953662 | phastConsElements100way | lod=28 | score:323, srow:583496 |
| 496 | chr1 | 161953664 | 161953665 | phastConsElements100way | lod=37 | score:351, srow:583497 |
| 496 | chr1 | 161953667 | 161953668 | phastConsElements100way | lod=35 | score:345, srow:583498 |
| 496 | chr1 | 161953670 | 161953677 | phastConsElements100way | lod=88 | score:437, srow:583499 |
| 496 | chr1 | 161953679 | 161953698 | phastConsElements100way | lod=249 | score:540, srow:583500 |
| 496 | chr1 | 161953700 | 161953719 | phastConsElements100way | lod=148 | score:488, srow:583501 |
| 496 | chr1 | 161953617 | 161954039 | cpgIsland | CpG: 28 | length:423, cpgNum:28, gcNum:251, perCpg:13.2, perGc:59.3, obsExp:0.75, srow:1869 |
| 496 | chr1 | 161951617 | 161953616 | cpgShore | — | values(x.gr)[overs$srow, ]:3429 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 496 | cellmeth_recounts | PrEC: 48, LNCaP: 11, DU145: 12 |  |
| 496 | cellmeth_diffreps_PrECvsLNCaP | A=176, B=13, Length=720, Event=Down, log2FC=-3.76, padj=0 |  |
| 496 | cellmeth_diffreps_PrECvsDU145 | A=176, B=13, Length=700, Event=Down, log2FC=-3.76, padj=0 |  |
| 496 | cellexp | id=ENSG00000162745, name=OLFML2B, PrEC=6, str=21, LNCaP=2, str=1, DU145=81, str=28 |  |
| 496 | tcgameth | site:cg06948089, B=0.91, L=0.86, H=0.82 |  |
| 496 | tcgaexp | gene=OLFML2B, entrez=25903, pos=chr1:161952982-161993644(-), B=448, L=362, M=405, H=740 |  |
| 496 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |