DMR 5791 chr11:406801-407050 (250bp)
| DMR Stats | |
|---|---|
| Position | chr11:406801-407050 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | SIGIRR (0bp away) |
| ANODEV p-value | 0.000862179967854 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5791 | SIGIRR | 4081 | uc001lpd.2 | chr11 | 405716 | 414999 | - | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) | 0.0 |
| 5791 | SIGIRR | 4081 | uc001lpe.1 | chr11 | 405716 | 417397 | - | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) | 0.0 |
| 5791 | SIGIRR | 4081 | uc001lpf.2 | chr11 | 405716 | 417397 | - | 250 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) | 0.0 |
| 5791 | SIGIRR | 4081 | uc001lpg.3 | chr11 | 405872 | 410027 | - | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (23.2), E7 (60.4), I7 (16.8), E8 (0) | 28.4 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 5791 | chr11 | 406936 | 407371 | wgEncodeRegTfbsClusteredV3 | UBTF | score:143, expCount:1, expNums:549, expScores:143, srow:639442 |
| 5791 | chr11 | 406955 | 407234 | wgEncodeRegTfbsClusteredV3 | CREB1 | score:131, expCount:1, expNums:47, expScores:131, srow:639443 |
| 5791 | chr11 | 406959 | 407222 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:255, expCount:1, expNums:86, expScores:255, srow:639444 |
| 5791 | chr11 | 406962 | 407241 | wgEncodeRegTfbsClusteredV3 | JUND | score:186, expCount:1, expNums:507, expScores:186, srow:639445 |
| 5791 | chr11 | 407005 | 407228 | wgEncodeRegTfbsClusteredV3 | SRF | score:250, expCount:1, expNums:113, expScores:250, srow:639446 |
| 5791 | chr11 | 407007 | 407163 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:477, expCount:2, expNums:88,217, expScores:340,477, srow:639447 |
| 5791 | chr11 | 407016 | 407156 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:410, expCount:1, expNums:109, expScores:410, srow:639448 |
| 5791 | chr11 | 406863 | 406875 | tfbsConsSites | V$RORA1_01 | score:870, zScore:1.74, srow:768078 |
| 5791 | chr11 | 406933 | 406951 | tfbsConsSites | V$PAX2_01 | score:770, zScore:1.69, srow:768079 |
| 5791 | chr11 | 406847 | 406847 | cosmic | COSM1720421 | srow:179591 |
| 5791 | chr11 | 406841 | 406845 | phastConsElements100way | lod=45 | score:370, srow:1312501 |
| 5791 | chr11 | 406847 | 406851 | phastConsElements100way | lod=47 | score:375, srow:1312502 |
| 5791 | chr11 | 406853 | 406868 | phastConsElements100way | lod=90 | score:439, srow:1312503 |
| 5791 | chr11 | 406871 | 406875 | phastConsElements100way | lod=31 | score:333, srow:1312504 |
| 5791 | chr11 | 406880 | 406899 | phastConsElements100way | lod=98 | score:447, srow:1312505 |
| 5791 | chr11 | 406904 | 406908 | phastConsElements100way | lod=26 | score:316, srow:1312506 |
| 5791 | chr11 | 406910 | 406914 | phastConsElements100way | lod=43 | score:366, srow:1312507 |
| 5791 | chr11 | 406919 | 406926 | phastConsElements100way | lod=23 | score:304, srow:1312508 |
| 5791 | chr11 | 406930 | 406983 | phastConsElements100way | lod=304 | score:559, srow:1312509 |
| 5791 | chr11 | 406985 | 406996 | phastConsElements100way | lod=81 | score:429, srow:1312510 |
| 5791 | chr11 | 407009 | 407014 | phastConsElements100way | lod=16 | score:268, srow:1312511 |
| 5791 | chr11 | 406492 | 407871 | cpgIsland | CpG: 111 | length:1380, cpgNum:111, gcNum:825, perCpg:16.1, perGc:59.8, obsExp:0.9, srow:3625 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 5791 | cellmeth_recounts | PrEC: 23, LNCaP: 129, DU145: 15 |  |
| 5791 | cellmeth_diffreps_PrECvsLNCaP | A=101, B=202, Length=420, Event=Up, log2FC=1, padj=3.16763251163113e-07 |  |
| 5791 | cellmeth_diffreps_PrECvsDU145 | A=251, B=23, Length=700, Event=Down, log2FC=-3.45, padj=0 |  |
| 5791 | cellmeth_diffreps_LNCaPvsDU145 | A=558.04, B=31.8, Length=1380, Event=Down, log2FC=-4.13, padj=0 |  |
| 5791 | cellexp | id=ENSG00000185187, name=SIGIRR, PrEC=804, str=295, LNCaP=3298, str=1795, DU145=329, str=114 |  |
| 5791 | tcgameth | site:cg18351999, B=0.51, L=0.51, H=0.45 |  |
| 5791 | tcgameth | site:cg24440302, B=0.3, L=0.42, H=0.3 |  |
| 5791 | tcgaexp | gene=SIGIRR, entrez=59307, pos=chr11:405716-417397(-), B=2062, L=2547, M=2519, H=2148 |  |