DMR 9599 chr22:19753951-19754250 (300bp)
| DMR Stats | |
|---|---|
| Position | chr22:19753951-19754250 (View on UCSC) |
| Width | 300bp |
| Genomic Context | 3' end |
| Nearest Genes | TBX1 (0bp away) |
| ANODEV p-value | 0.0296934391215 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9599 | TBX1 | 19070 | uc002zqa.1 | chr22 | 19744226 | 19754855 | + | 300 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 100.0 |
| 9599 | TBX1 | 19070 | uc002zqb.3 | chr22 | 19744226 | 19767068 | + | 300 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) | 0.0 |
| 9599 | TBX1 | 19070 | uc002zqc.3 | chr22 | 19744226 | 19771112 | + | 300 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 9599 | chr22 | 19754221 | 19754227 | phastConsElements100way | lod=38 | score:354, srow:5541888 |
| 9599 | chr22 | 19754229 | 19754254 | phastConsElements100way | lod=119 | score:467, srow:5541889 |
| 9599 | chr22 | 19753313 | 19755013 | cpgIsland | CpG: 147 | length:1701, cpgNum:147, gcNum:913, perCpg:17.3, perGc:53.7, obsExp:1.22, srow:17526 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 9599 | cellmeth_recounts | PrEC: 177, LNCaP: 2026, DU145: 4 |  |
| 9599 | cellmeth_diffreps_PrECvsLNCaP | A=1437, B=7146, Length=3740, Event=Up, log2FC=2.31, padj=0 |  |
| 9599 | cellmeth_diffreps_PrECvsDU145 | A=982, B=7, Length=2120, Event=Down, log2FC=-7.13, padj=0 |  |
| 9599 | cellmeth_diffreps_LNCaPvsDU145 | A=8169.64, B=68.29, Length=5100, Event=Down, log2FC=-6.9, padj=0 |  |
| 9599 | cellexp | id=ENSG00000184058, name=TBX1, PrEC=12, str=16, LNCaP=2340, str=1190, DU145=32, str=3 |  |
| 9599 | tcgaexp | gene=TBX1, entrez=6899, pos=chr22:19744226-19771112(+), B=319, L=910, M=900, H=902 |  |