DMR Stats | |
---|---|
Position | chr1:7129951-7130250 (View on UCSC) |
Width | 300bp |
Genomic Context | intron |
Nearest Genes | CAMTA1 (0bp away) |
ANODEV p-value | 4.79278549858e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24958 | CAMTA1 | 162 | uc001aoi.3 | chr1 | 6845384 | 7829766 | + | 300 | 100.0 | 2.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24958 | chr1 | 7129986 | 7130455 | wgEncodeRegDnaseClusteredV2 | 15 | score:820, srow:5614 |
24958 | chr1 | 7129827 | 7130162 | wgEncodeRegTfbsClusteredV3 | YY1 | score:362, expCount:1, expNums:162, expScores:362, srow:16001 |
24958 | chr1 | 7129846 | 7130335 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:175, expCount:1, expNums:157, expScores:175, srow:16002 |
24958 | chr1 | 7129883 | 7130258 | wgEncodeRegTfbsClusteredV3 | TBP | score:171, expCount:1, expNums:359, expScores:171, srow:16003 |
24958 | chr1 | 7129951 | 7130190 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:171, expCount:1, expNums:149, expScores:171, srow:16004 |
24958 | chr1 | 7130006 | 7130019 | tfbsConsSites | V$CEBP_Q2 | score:899, zScore:2.07, srow:12574 |
24958 | chr1 | 7130006 | 7130021 | tfbsConsSites | V$BRN2_01 | score:824, zScore:2.16, srow:12575 |
24958 | chr1 | 7129900 | 7129979 | phastConsElements100way | lod=274 | score:549, srow:26191 |
24958 | chr1 | 7129982 | 7129987 | phastConsElements100way | lod=32 | score:337, srow:26192 |
24958 | chr1 | 7129994 | 7129997 | phastConsElements100way | lod=19 | score:285, srow:26193 |
24958 | chr1 | 7130000 | 7130004 | phastConsElements100way | lod=26 | score:316, srow:26194 |
24958 | chr1 | 7130008 | 7130021 | phastConsElements100way | lod=49 | score:379, srow:26195 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24958 | cellmeth_recounts | PrEC: 9, LNCaP: 4, DU145: 5 | |
24958 | cellexp | id=ENSG00000171735, name=CAMTA1, PrEC=1333, str=672, LNCaP=1796, str=1755, DU145=1524, str=1409 | |
24958 | tcgameth | site:cg21144493, B=0.42, L=0.69, H=0.65 | |
24958 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24958 | tcgaexp | gene=CAMTA1, entrez=23261, pos=chr1:6845384-7829766(+), B=1373, L=1307, M=1203, H=1168 | |
24958 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |