DMR Stats | |
---|---|
Position | chr1:8395101-8395250 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | SLC45A1 (0bp away) |
ANODEV p-value | 0.0240440441191 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 0.0 (0.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
89 | SLC45A1 | 170 | uc001apb.3 | chr1 | 8384390 | 8404227 | + | 150 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
89 | SLC45A1 | 170 | uc001apc.3 | chr1 | 8390198 | 8404227 | + | 150 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
89 | chr1 | 8393344 | 8395343 | cpgShore | — | values(x.gr)[overs$srow, ]:622 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
89 | cellmeth_recounts | PrEC: 3, LNCaP: 1, DU145: 5 | |
89 | cellmeth_diffreps_PrECvsLNCaP | A=13, B=0, Length=300, Event=Down, log2FC=-Inf, padj=0.000827318446465587 | |
89 | cellmeth_diffreps_PrECvsLNCaP | A=340, B=25, Length=680, Event=Down, log2FC=-3.77, padj=0 | |
89 | cellmeth_diffreps_PrECvsDU145 | A=12, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00174045876043459 | |
89 | cellmeth_diffreps_PrECvsDU145 | A=340, B=11, Length=660, Event=Down, log2FC=-4.95, padj=0 | |
89 | cellexp | id=ENSG00000162426, name=SLC45A1, PrEC=29, str=12, LNCaP=91, str=48, DU145=221, str=79 | |
89 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
89 | tcgaexp | gene=SLC45A1, entrez=50651, pos=chr1:8384390-8404227(+), B=339, L=314, M=328, H=358 | |
89 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |