DMR 26748 chr2:235404251-235404800 (550bp)

DMR Stats
Positionchr2:235404251-235404800 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesARL4C (0bp away)
ANODEV p-value1.30140342947e-11
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26748 ARL4C 17769 uc002vvm.4 chr2 235401686 235405233 - 550 100.0 0.1 0 12.18 E1 (26.36), I1 (32), E2 (41.82) 0.0
26748 ARL4C 17769 uc002vvn.3 chr2 235401686 235405693 - 550 100.0 0.1 0 0.0 E1 (100) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26748 chr2 235404503 235406541 cpgIsland CpG: 184 length:2039, cpgNum:184, gcNum:1225, perCpg:18, perGc:60.1, obsExp:1, srow:16105
26748 chr2 235403899 235405913 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:19, expNums:61,62,78,147,163,249,330,338,340,366,461,465,596,599,619,632,633,634,637, expScores:376,231,619,267,306,181,240,282,264,251,197,376,379,425,249,553,319,239,124, srow:2420863
26748 chr2 235404461 235405855 wgEncodeRegDnaseClusteredV2 121 score:1000, srow:691507
26748 chr2 235404280 235405405 wgEncodeRegTfbsClusteredV3 EZH2 score:661, expCount:1, expNums:13, expScores:557, srow:2420870
26748 chr2 235404735 235405254 wgEncodeRegTfbsClusteredV3 ETS1 score:226, expCount:1, expNums:51, expScores:226, srow:2420873
26748 chr2 235404166 235405121 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:278, expCount:2, expNums:63,250, expScores:278,136, srow:2420869
26748 chr2 235404618 235404833 wgEncodeRegTfbsClusteredV3 CTCF score:154, expCount:1, expNums:595, expScores:154, srow:2420872
26748 chr2 235404797 235404816 phastConsElements100way lod=231 score:532, srow:5207787
26748 chr2 235404568 235404803 wgEncodeRegTfbsClusteredV3 RAD21 score:164, expCount:1, expNums:466, expScores:164, srow:2420871
26748 chr2 235404780 235404795 tfbsConsSites V$AHRARNT_01 score:852, zScore:2.1, srow:3016631
26748 chr2 235404785 235404795 phastConsElements100way lod=104 score:453, srow:5207786
26748 chr2 235404650 235404781 phastConsElements100way lod=1390 score:710, srow:5207785
26748 chr2 235404743 235404757 tfbsConsSites V$TAXCREB_02 score:764, zScore:2.02, srow:3016630
26748 chr2 235404741 235404754 tfbsConsSites V$CEBPB_02 score:847, zScore:1.66, srow:3016628
26748 chr2 235404742 235404752 tfbsConsSites V$BACH2_01 score:881, zScore:1.96, srow:3016629
26748 chr2 235404730 235404748 tfbsConsSites V$PAX2_01 score:799, zScore:2.33, srow:3016627
26748 chr2 235404735 235404735 cosmic COSM1669876 srow:732982
26748 chr2 235404720 235404720 cosmic COSM1318963 srow:732981
26748 chr2 235404674 235404689 tfbsConsSites V$ELK1_01 score:873, zScore:2.27, srow:3016625
26748 chr2 235404677 235404686 tfbsConsSites V$CETS1P54_01 score:941, zScore:1.75, srow:3016626
26748 chr2 235404686 235404686 cosmic COSM1018210 srow:732980
26748 chr2 235404668 235404668 cosmic COSM117473 srow:732979
26748 chr2 235404656 235404656 cosmic COSM1166843 srow:732978
26748 chr2 235403978 235404647 wgEncodeRegTfbsClusteredV3 RBBP5 score:179, expCount:1, expNums:8, expScores:179, srow:2420864
26748 chr2 235404629 235404633 phastConsElements100way lod=13 score:247, srow:5207784
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  • 25 of 43 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26748 cellmeth_recounts PrEC: 1, LNCaP: 1487, DU145: 6
26748 cellmeth_diffreps_PrECvsLNCaP A=17, B=2261, Length=1600, Event=Up, log2FC=7.06, padj=0
26748 cellmeth_diffreps_LNCaPvsDU145 A=2417.11, B=9.35, Length=1620, Event=Down, log2FC=-8.01, padj=0
26748 cellexp id=ENSG00000188042, name=ARL4C, PrEC=24273, str=25479, LNCaP=161, str=243, DU145=477, str=675
26748 tcgameth site:cg11509907, B=0.09, L=0.37, H=0.38
26748 tcgaexp gene=ARL4C, entrez=10123, pos=chr2:235401686-235405693(-), B=2057, L=1304, M=1190, H=1246