DMR 32089 chr12:48577851-48578800 (950bp)
| DMR Stats | |
|---|---|
| Position | chr12:48577851-48578800 (View on UCSC) |
| Width | 950bp |
| Genomic Context | promoter |
| Nearest Genes | C12orf68 (0bp away) |
| ANODEV p-value | 7.4683764549e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32089 | C12orf68 | 6343 | uc001rrj.2 | chr12 | 48577366 | 48579709 | + | 950 | 100.0 | 2.52 | 0 | 1.58 | E1 (100) | 9.58 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32089 | chr12 | 48578575 | 48580574 | cpgShore | — | values(x.gr)[overs$srow, ]:9697 |
| 32089 | chr12 | 48577483 | 48579034 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:706, expCount:6, expNums:19,21,36,38,40,43, expScores:104,517,251,300,411,575, srow:922348 |
| 32089 | chr12 | 48578113 | 48578922 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:258, expCount:1, expNums:578, expScores:258, srow:922350 |
| 32089 | chr12 | 48577921 | 48578875 | wgEncodeRegDnaseClusteredV2 | 18 | score:442, srow:268708 |
| 32089 | chr12 | 48578788 | 48578861 | phastConsElements100way | lod=305 | score:560, srow:1958163 |
| 32089 | chr12 | 48578743 | 48578754 | phastConsElements100way | lod=31 | score:333, srow:1958162 |
| 32089 | chr12 | 48578735 | 48578752 | tfbsConsSites | V$SRF_01 | score:792, zScore:2.9, srow:1141793 |
| 32089 | chr12 | 48578734 | 48578750 | tfbsConsSites | V$YY1_01 | score:872, zScore:1.91, srow:1141792 |
| 32089 | chr12 | 48578711 | 48578740 | phastConsElements100way | lod=101 | score:450, srow:1958161 |
| 32089 | chr12 | 48578671 | 48578681 | phastConsElements100way | lod=16 | score:268, srow:1958160 |
| 32089 | chr12 | 48578658 | 48578667 | tfbsConsSites | V$HSF2_01 | score:940, zScore:2.13, srow:1141791 |
| 32089 | chr12 | 48578643 | 48578663 | phastConsElements100way | lod=65 | score:407, srow:1958159 |
| 32089 | chr12 | 48578610 | 48578627 | phastConsElements100way | lod=53 | score:387, srow:1958158 |
| 32089 | chr12 | 48578593 | 48578598 | phastConsElements100way | lod=18 | score:280, srow:1958157 |
| 32089 | chr12 | 48578567 | 48578575 | phastConsElements100way | lod=22 | score:300, srow:1958156 |
| 32089 | chr12 | 48577362 | 48578574 | cpgIsland | CpG: 112 | length:1213, cpgNum:112, gcNum:822, perCpg:18.5, perGc:67.8, obsExp:0.8, srow:5269 |
| 32089 | chr12 | 48578553 | 48578560 | phastConsElements100way | lod=21 | score:295, srow:1958155 |
| 32089 | chr12 | 48578529 | 48578548 | phastConsElements100way | lod=49 | score:379, srow:1958154 |
| 32089 | chr12 | 48578536 | 48578545 | tfbsConsSites | V$HMX1_01 | score:812, zScore:1.71, srow:1141790 |
| 32089 | chr12 | 48578521 | 48578538 | tfbsConsSites | V$IRF7_01 | score:853, zScore:2.76, srow:1141789 |
| 32089 | chr12 | 48578511 | 48578524 | phastConsElements100way | lod=25 | score:312, srow:1958153 |
| 32089 | chr12 | 48578503 | 48578506 | phastConsElements100way | lod=15 | score:262, srow:1958152 |
| 32089 | chr12 | 48578413 | 48578493 | phastConsElements100way | lod=284 | score:553, srow:1958151 |
| 32089 | chr12 | 48578475 | 48578489 | tfbsConsSites | V$CDPCR3_01 | score:794, zScore:1.82, srow:1141788 |
| 32089 | chr12 | 48578466 | 48578480 | tfbsConsSites | V$SPZ1_01 | score:878, zScore:1.91, srow:1141787 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32089 | cellmeth_recounts | PrEC: 5, LNCaP: 67, DU145: 41 |  |
| 32089 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=39, Length=380, Event=Up, log2FC=3.29, padj=6.0485972066321e-07 |  |
| 32089 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32089 | cellexp | id=ENSG00000177875, name=C12orf68, PrEC=9, str=18, LNCaP=4, str=4, DU145=58, str=20 |  |
| 32089 | tcgameth | site:cg07454491, B=0.1, L=0.25, H=0.22 |  |
| 32089 | tcgameth | site:cg10216353, B=0.08, L=0.24, H=0.17 |  |
| 32089 | tcgameth | site:cg14793287, B=0.4, L=0.6, H=0.59 |  |
| 32089 | tcgameth | site:cg15959252, B=0.57, L=0.82, H=0.78 |  |
| 32089 | tcgameth | site:cg20954987, B=0.22, L=0.44, H=0.43 |  |
| 32089 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32089 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 32089 | tcgaexp | gene=C12orf68, entrez=387856, pos=chr12:48577366-48579709(+), B=83, L=63, M=80, H=68 |  |