DMR Stats | |
---|---|
Position | chr1:2561801-2562550 (View on UCSC) |
Width | 750bp |
Genomic Context | promoter |
Nearest Genes | MMEL1 (0bp away) |
ANODEV p-value | 0.00162482701834 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26 | MMEL1 | 112 | uc001ajy.2 | chr1 | 2522081 | 2564481 | - | 750 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26 | chr1 | 2562262 | 2562617 | wgEncodeRegTfbsClusteredV3 | NR2C2 | score:174, expCount:1, expNums:318, expScores:174, srow:8384 |
26 | chr1 | 2562261 | 2562515 | wgEncodeRegDnaseClusteredV2 | 2 | score:412, srow:1783 |
26 | chr1 | 2562241 | 2562596 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:181, expCount:1, expNums:83, expScores:181, srow:8383 |
26 | chr1 | 2561984 | 2562579 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:270, expCount:1, expNums:96, expScores:270, srow:8382 |
26 | chr1 | 2561837 | 2562146 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:112, expCount:1, expNums:358, expScores:112, srow:8381 |
26 | chr1 | 2561812 | 2562141 | wgEncodeRegTfbsClusteredV3 | MAX | score:148, expCount:1, expNums:352, expScores:148, srow:8380 |
26 | chr1 | 2561056 | 2563055 | cpgShore | — | values(x.gr)[overs$srow, ]:353 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26 | cellmeth_recounts | PrEC: 1055, LNCaP: 220, DU145: 94 | |
26 | cellmeth_diffreps_PrECvsLNCaP | A=1588, B=177, Length=980, Event=Down, log2FC=-3.17, padj=0 | |
26 | cellmeth_diffreps_PrECvsDU145 | A=1588, B=74, Length=980, Event=Down, log2FC=-4.42, padj=0 | |
26 | cellmeth_diffreps_LNCaPvsDU145 | A=116.53, B=39.29, Length=440, Event=Down, log2FC=-1.57, padj=8.43936837428414e-08 | |
26 | cellmeth_diffreps_LNCaPvsDU145 | A=60.94, B=20.58, Length=300, Event=Down, log2FC=-1.57, padj=0.000804102224851697 | |
26 | cellexp | id=ENSG00000142606, name=MMEL1, PrEC=10, str=2, LNCaP=345, str=321, DU145=7, str=4 | |
26 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
26 | tcgaexp | gene=MMEL1, entrez=79258, pos=chr1:2522081-2564481(-), B=101, L=114, M=131, H=107 | |
26 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |