DMR 29893 chr8:49468251-49469100 (850bp)

DMR Stats
Positionchr8:49468251-49469100 (View on UCSC)
Width850bp
Genomic Contextintergenic
Nearest GenesEFCAB1 (154250bp away)
ANODEV p-value4.33801143155e-12
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29893 chr8 49469100 49469106 phastConsElements100way lod=48 score:377, srow:8825240
29893 chr8 49469085 49469095 tfbsConsSites V$GATA_C score:906, zScore:2.09, srow:5105234
29893 chr8 49469085 49469098 phastConsElements100way lod=92 score:441, srow:8825239
29893 chr8 49469073 49469080 phastConsElements100way lod=51 score:383, srow:8825238
29893 chr8 49469061 49469068 phastConsElements100way lod=41 score:361, srow:8825237
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO1_02 score:839, zScore:2.28, srow:5105231
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO3_01 score:835, zScore:1.87, srow:5105232
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO4_02 score:824, zScore:1.82, srow:5105233
29893 chr8 49469026 49469033 tfbsConsSites V$CREBP1_01 score:877, zScore:1.83, srow:5105230
29893 chr8 49469025 49469040 tfbsConsSites V$FREAC2_01 score:817, zScore:1.81, srow:5105228
29893 chr8 49469025 49469040 tfbsConsSites V$FREAC4_01 score:877, zScore:3.17, srow:5105229
29893 chr8 49469019 49469026 tfbsConsSites V$STAT4_01 score:1000, zScore:1.65, srow:5105227
29893 chr8 49469014 49469059 phastConsElements100way lod=268 score:547, srow:8825236
29893 chr8 49469010 49469011 phastConsElements100way lod=17 score:274, srow:8825235
29893 chr8 49468963 49468990 phastConsElements100way lod=139 score:482, srow:8825234
29893 chr8 49468960 49470959 cpgShore — values(x.gr)[overs$srow, ]:46456
29893 chr8 49468952 49468970 tfbsConsSites V$AHRARNT_02 score:808, zScore:2.36, srow:5105226
29893 chr8 49468943 49468958 phastConsElements100way lod=68 score:411, srow:8825233
29893 chr8 49468917 49469316 wgEncodeRegTfbsClusteredV3 FOS score:254, expCount:1, expNums:457, expScores:254, srow:3985963
29893 chr8 49468873 49468894 tfbsConsSites V$TCF11MAFG_01 score:747, zScore:1.76, srow:5105225
29893 chr8 49468851 49468859 tfbsConsSites V$MSX1_01 score:942, zScore:2.59, srow:5105224
29893 chr8 49468847 49468862 tfbsConsSites V$FREAC3_01 score:809, zScore:1.85, srow:5105223
29893 chr8 49468846 49468863 tfbsConsSites V$SRF_01 score:771, zScore:2.53, srow:5105222
29893 chr8 49468845 49468861 tfbsConsSites V$YY1_01 score:867, zScore:1.82, srow:5105221
29893 chr8 49468827 49469270 wgEncodeRegTfbsClusteredV3 GATA2 score:227, expCount:1, expNums:459, expScores:227, srow:3985962
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Omics Overlaps

Dmrid Omic Set Data Plot
29893 cellmeth_recounts PrEC: 3, LNCaP: 396, DU145: 28
29893 cellmeth_diffreps_PrECvsLNCaP A=4, B=318, Length=1100, Event=Up, log2FC=6.31, padj=0
29893 cellmeth_diffreps_LNCaPvsDU145 A=35.28, B=0.94, Length=400, Event=Down, log2FC=-5.24, padj=4.08953502356965e-08
29893 cellmeth_diffreps_LNCaPvsDU145 A=304.68, B=18.71, Length=660, Event=Down, log2FC=-4.03, padj=0
29893 cellexp id=ENSG00000253608, name=RP11-770E5.1, PrEC=8, str=27, LNCaP=0, str=0, DU145=0, str=0
29893 cellexp id=ENSG00000253688, name=RP11-567J20.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0
29893 tcgameth site:cg04920358, B=0.07, L=0.47, H=0.4
29893 tcgameth site:cg10826197, B=0.03, L=0.33, H=0.38
29893 tcgameth site:cg14095438, B=0.16, L=0.56, H=0.51
29893 tcgameth site:cg14907769, B=0.18, L=0.62, H=0.57
29893 tcgameth site:cg18991611, B=0.07, L=0.59, H=0.54
29893 tcgameth site:cg19414967, B=0.33, L=0.67, H=0.66
29893 tcgameth site:cg20527270, B=0.1, L=0.67, H=0.56
29893 tcgameth site:cg27038634, B=0.27, L=0.55, H=0.55