DMR 32089 chr12:48577851-48578800 (950bp)
| DMR Stats | |
|---|---|
| Position | chr12:48577851-48578800 (View on UCSC) |
| Width | 950bp |
| Genomic Context | promoter |
| Nearest Genes | C12orf68 (0bp away) |
| ANODEV p-value | 7.4683764549e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32089 | C12orf68 | 6343 | uc001rrj.2 | chr12 | 48577366 | 48579709 | + | 950 | 100.0 | 2.52 | 0 | 1.58 | E1 (100) | 9.58 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32089 | chr12 | 48578575 | 48580574 | cpgShore | — | values(x.gr)[overs$srow, ]:9697 |
| 32089 | chr12 | 48578436 | 48578436 | cosmic | COSM1606177 | srow:277816 |
| 32089 | chr12 | 48578409 | 48578410 | cosmic | COSM301350 | srow:277815 |
| 32089 | chr12 | 48578373 | 48578373 | cosmic | COSM939803 | srow:277814 |
| 32089 | chr12 | 48578326 | 48578326 | cosmic | COSM939802 | srow:277813 |
| 32089 | chr12 | 48578270 | 48578270 | cosmic | COSM939801 | srow:277812 |
| 32089 | chr12 | 48578200 | 48578200 | cosmic | COSM431174 | srow:277811 |
| 32089 | chr12 | 48578155 | 48578155 | cosmic | COSM1361862 | srow:277810 |
| 32089 | chr12 | 48578079 | 48578079 | cosmic | COSM459492 | srow:277809 |
| 32089 | chr12 | 48577998 | 48577998 | cosmic | COSM40269 | srow:277808 |
| 32089 | chr12 | 48577967 | 48577967 | cosmic | COSM939800 | srow:277807 |
| 32089 | chr12 | 48578065 | 48578073 | tfbsConsSites | V$AREB6_04 | score:973, zScore:2.08, srow:1141769 |
| 32089 | chr12 | 48577985 | 48577991 | tfbsConsSites | V$AP2REP_01 | score:968, zScore:1.83, srow:1141758 |
| 32089 | chr12 | 48578658 | 48578667 | tfbsConsSites | V$HSF2_01 | score:940, zScore:2.13, srow:1141791 |
| 32089 | chr12 | 48578050 | 48578061 | tfbsConsSites | V$LMO2COM_01 | score:929, zScore:1.85, srow:1141767 |
| 32089 | chr12 | 48578144 | 48578151 | tfbsConsSites | V$E2F_02 | score:896, zScore:2.02, srow:1141772 |
| 32089 | chr12 | 48578223 | 48578232 | tfbsConsSites | V$NCX_01 | score:888, zScore:2.15, srow:1141779 |
| 32089 | chr12 | 48578230 | 48578239 | tfbsConsSites | V$CREL_01 | score:888, zScore:1.67, srow:1141781 |
| 32089 | chr12 | 48578466 | 48578480 | tfbsConsSites | V$SPZ1_01 | score:878, zScore:1.91, srow:1141787 |
| 32089 | chr12 | 48578734 | 48578750 | tfbsConsSites | V$YY1_01 | score:872, zScore:1.91, srow:1141792 |
| 32089 | chr12 | 48578229 | 48578242 | tfbsConsSites | V$NFKB_Q6 | score:868, zScore:2.38, srow:1141780 |
| 32089 | chr12 | 48578205 | 48578216 | tfbsConsSites | V$EGR3_01 | score:867, zScore:2.37, srow:1141778 |
| 32089 | chr12 | 48578186 | 48578200 | tfbsConsSites | V$SPZ1_01 | score:862, zScore:1.64, srow:1141774 |
| 32089 | chr12 | 48578428 | 48578437 | tfbsConsSites | V$NFKAPPAB50_01 | score:857, zScore:1.68, srow:1141785 |
| 32089 | chr12 | 48578431 | 48578443 | tfbsConsSites | V$MZF1_02 | score:855, zScore:1.67, srow:1141786 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32089 | cellmeth_recounts | PrEC: 5, LNCaP: 67, DU145: 41 |  |
| 32089 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=39, Length=380, Event=Up, log2FC=3.29, padj=6.0485972066321e-07 |  |
| 32089 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32089 | cellexp | id=ENSG00000177875, name=C12orf68, PrEC=9, str=18, LNCaP=4, str=4, DU145=58, str=20 |  |
| 32089 | tcgameth | site:cg07454491, B=0.1, L=0.25, H=0.22 |  |
| 32089 | tcgameth | site:cg10216353, B=0.08, L=0.24, H=0.17 |  |
| 32089 | tcgameth | site:cg14793287, B=0.4, L=0.6, H=0.59 |  |
| 32089 | tcgameth | site:cg15959252, B=0.57, L=0.82, H=0.78 |  |
| 32089 | tcgameth | site:cg20954987, B=0.22, L=0.44, H=0.43 |  |
| 32089 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32089 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 32089 | tcgaexp | gene=C12orf68, entrez=387856, pos=chr12:48577366-48579709(+), B=83, L=63, M=80, H=68 |  |