DMR Stats | |
---|---|
Position | chr1:1297151-1297300 (View on UCSC) |
Width | 150bp |
Genomic Context | promoter |
Nearest Genes | MXRA8 (0bp away) |
ANODEV p-value | 0.0244281802858 |
Frequencies | Benign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9 | MXRA8 | 62 | uc001afa.3 | chr1 | 1288071 | 1297157 | - | 7 | 4.67 | 2.9 | 0 | 100.0 | E1 (4.67), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
9 | chr1 | 1297166 | 1297350 | wgEncodeRegDnaseClusteredV2 | 2 | score:240, srow:599 |
9 | chr1 | 1296828 | 1297311 | wgEncodeRegTfbsClusteredV3 | SETDB1 | score:156, expCount:1, expNums:533, expScores:156, srow:3233 |
9 | chr1 | 1297285 | 1297704 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:277, expCount:1, expNums:199, expScores:277, srow:3234 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
9 | cellmeth_recounts | PrEC: 41, LNCaP: 16, DU145: 3 | |
9 | cellmeth_diffreps_PrECvsLNCaP | A=504, B=105, Length=1220, Event=Down, log2FC=-2.26, padj=0 | |
9 | cellmeth_diffreps_PrECvsDU145 | A=504, B=31, Length=1260, Event=Down, log2FC=-4.02, padj=0 | |
9 | cellexp | id=ENSG00000162576, name=MXRA8, PrEC=509, str=842, LNCaP=4612, str=1264, DU145=911, str=483 | |
9 | tcgameth | site:cg21165029, B=0.61, L=0.56, H=0.58 | |
9 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
9 | tcgaexp | gene=MXRA8, entrez=54587, pos=chr1:1288071-1297157(-), B=2112, L=2487, M=2032, H=2187 | |
9 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |