DMR Stats | |
---|---|
Position | chr1:7516901-7517200 (View on UCSC) |
Width | 300bp |
Genomic Context | intron |
Nearest Genes | CAMTA1 (0bp away) |
ANODEV p-value | 0.00108143761423 |
Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36562 | CAMTA1 | 162 | uc001aoi.3 | chr1 | 6845384 | 7829766 | + | 300 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36562 | chr1 | 7516566 | 7516915 | wgEncodeRegDnaseClusteredV2 | 6 | score:268, srow:5943 |
36562 | chr1 | 7516921 | 7517195 | wgEncodeRegDnaseClusteredV2 | 4 | score:650, srow:5944 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36562 | cellmeth_recounts | PrEC: 12, LNCaP: 5, DU145: 0 | |
36562 | cellmeth_diffreps_PrECvsDU145 | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05 | |
36562 | cellexp | id=ENSG00000171735, name=CAMTA1, PrEC=1333, str=672, LNCaP=1796, str=1755, DU145=1524, str=1409 | |
36562 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36562 | tcgaexp | gene=CAMTA1, entrez=23261, pos=chr1:6845384-7829766(+), B=1373, L=1307, M=1203, H=1168 | |
36562 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |