DMR Stats | |
---|---|
Position | chr1:2064001-2064150 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | PRKCZ (0bp away) |
ANODEV p-value | 0.0154791125519 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19 | PRKCZ | 94 | uc001aiq.3 | chr1 | 1981909 | 2116834 | + | 150 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
19 | PRKCZ | 94 | uc001air.3 | chr1 | 2005086 | 2116834 | + | 150 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
19 | PRKCZ | 94 | uc001ais.3 | chr1 | 2036155 | 2116834 | + | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
19 | PRKCZ | 94 | uc010nyw.2 | chr1 | 2005425 | 2116834 | + | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
19 | chr1 | 2063701 | 2064315 | wgEncodeRegDnaseClusteredV2 | 89 | score:1000, srow:1239 |
19 | chr1 | 2063600 | 2064250 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:67, expNums:0,2,5,12,14,16,18,20,24,35,37,42,44,49,137,174,213,262,463,493,595,597,598,601,603,604,609,615,621,636,638,639,640,641,642,643,644,645,646,650,652,657,658,659,660,661,662,663,665,667,668,669,671,672,673,674,675,676,677,678,679,681,682,684,687,688,689, expScores:175,132,650,404,133,380,179,144,138,336,731,531,806,98,573,733,901,407,1000,1000,268,1000,1000,119,387,538,311,233,1000,818,150,474,511,759,1000,1000,568,597,1000,132,211,691,702,1000,477,798,1000,110,328,370,535,491,156,602,976,809,531,759,293,688,852,365,1000,419,684,215,247, srow:6141 |
19 | chr1 | 2063632 | 2064071 | wgEncodeRegTfbsClusteredV3 | MYC | score:193, expCount:1, expNums:489, expScores:193, srow:6143 |
19 | chr1 | 2063649 | 2064084 | wgEncodeRegTfbsClusteredV3 | UBTF | score:154, expCount:1, expNums:549, expScores:154, srow:6144 |
19 | chr1 | 2063662 | 2064031 | wgEncodeRegTfbsClusteredV3 | MAZ | score:256, expCount:1, expNums:512, expScores:256, srow:6146 |
19 | chr1 | 2063680 | 2064003 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:144, expCount:1, expNums:215, expScores:144, srow:6147 |
19 | chr1 | 2063822 | 2065492 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:7, expNums:32,147,229,465,524,525,577, expScores:177,264,516,1000,189,182,202, srow:6152 |
19 | chr1 | 2064005 | 2064284 | wgEncodeRegTfbsClusteredV3 | FOS | score:401, expCount:3, expNums:557,558,559, expScores:275,401,194, srow:6153 |
19 | chr1 | 2064025 | 2064624 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:126, expCount:1, expNums:348, expScores:126, srow:6154 |
19 | chr1 | 2064036 | 2064345 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:246, expCount:1, expNums:562, expScores:246, srow:6155 |
19 | chr1 | 2063745 | 2064195 | oreganno | OREG0013004 | id:OREG0013004, srow:23 |
19 | chr1 | 2063783 | 2064052 | cpgIsland | CpG: 20 | length:270, cpgNum:20, gcNum:171, perCpg:14.8, perGc:63.3, obsExp:0.77, srow:165 |
19 | chr1 | 2064053 | 2064628 | cpgShore | — | values(x.gr)[overs$srow, ]:264 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
19 | cellmeth_recounts | PrEC: 49, LNCaP: 4, DU145: 1 | |
19 | cellmeth_diffreps_PrECvsLNCaP | A=108, B=7, Length=600, Event=Down, log2FC=-3.95, padj=0 | |
19 | cellmeth_diffreps_PrECvsDU145 | A=100, B=11, Length=460, Event=Down, log2FC=-3.18, padj=0 | |
19 | cellexp | id=ENSG00000067606, name=PRKCZ, PrEC=1187, str=1283, LNCaP=1606, str=1028, DU145=964, str=723 | |
19 | tcgameth | site:cg25845463, B=0.69, L=0.76, H=0.72 | |
19 | tcgaexp | gene=PRKCZ, entrez=5590, pos=chr1:1981909-2116834(+), B=1809, L=2383, M=2268, H=1943 | |
19 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
19 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |