DMR Stats | |
---|---|
Position | chr5:107004851-107005250 (View on UCSC) |
Width | 400bp |
Genomic Context | intron |
Nearest Genes | EFNA5 (0bp away) |
ANODEV p-value | 8.20697537707e-10 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 1.0 (11.11 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
28068 | EFNA5 | 22941 | uc003kol.3 | chr5 | 106712590 | 107006596 | - | 400 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
28068 | EFNA5 | 22941 | uc010jbr.1 | chr5 | 106762677 | 107006596 | - | 400 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
28068 | chr5 | 107004461 | 107004955 | wgEncodeRegDnaseClusteredV2 | 51 | score:425, srow:960474 |
28068 | chr5 | 107004966 | 107005715 | wgEncodeRegDnaseClusteredV2 | 79 | score:1000, srow:960475 |
28068 | chr5 | 107004462 | 107004897 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:152, expCount:1, expNums:287, expScores:152, srow:3281978 |
28068 | chr5 | 107004793 | 107005312 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:180, expCount:1, expNums:357, expScores:180, srow:3281979 |
28068 | chr5 | 107004918 | 107005373 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:108, expCount:2, expNums:250,253, expScores:108,105, srow:3281980 |
28068 | chr5 | 107004998 | 107005007 | tfbsConsSites | V$MYB_Q6 | score:912, zScore:1.69, srow:4179953 |
28068 | chr5 | 107004998 | 107005021 | tfbsConsSites | V$HTF_01 | score:783, zScore:2.12, srow:4179954 |
28068 | chr5 | 107004966 | 107004970 | phastConsElements100way | lod=13 | score:247, srow:7198498 |
28068 | chr5 | 107005131 | 107008191 | cpgIsland | CpG: 256 | length:3061, cpgNum:256, gcNum:1895, perCpg:16.7, perGc:61.9, obsExp:0.88, srow:20916 |
28068 | chr5 | 107003131 | 107005130 | cpgShore | — | values(x.gr)[overs$srow, ]:37814 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
28068 | cellmeth_recounts | PrEC: 2, LNCaP: 20, DU145: 0 | |
28068 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00547907730955432 | |
28068 | cellexp | id=ENSG00000184349, name=EFNA5, PrEC=892, str=910, LNCaP=7004, str=7141, DU145=2867, str=2789 | |
28068 | tcgaexp | gene=EFNA5, entrez=1946, pos=chr5:106712590-107006596(-), B=998, L=638, M=537, H=572 |