DMR Stats | |
---|---|
Position | chr1:900901-901350 (View on UCSC) |
Width | 450bp |
Genomic Context | promoter |
Nearest Genes | KLHL17 (0bp away) |
ANODEV p-value | 0.00156845987141 |
Frequencies | Benign: 2.0 (28.57%), Low: 3.0 (50.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36494 | KLHL17 | 32 | uc001aca.2 | chr1 | 895967 | 901099 | + | 199 | 44.22 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (44.22) | 100.0 |
36494 | KLHL17 | 32 | uc001acc.2 | chr1 | 897461 | 901099 | + | 199 | 44.22 | 0.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (44.22) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36494 | chr1 | 901146 | 902510 | wgEncodeRegDnaseClusteredV2 | 118 | score:1000, srow:172 |
36494 | chr1 | 901074 | 901083 | tfbsConsSites | V$FOXO1_01 | score:947, zScore:1.64, srow:99 |
36494 | chr1 | 901055 | 901061 | phastConsElements100way | lod=38 | score:354, srow:2535 |
36494 | chr1 | 901074 | 901079 | phastConsElements100way | lod=24 | score:308, srow:2536 |
36494 | chr1 | 901090 | 901094 | phastConsElements100way | lod=13 | score:247, srow:2537 |
36494 | chr1 | 894314 | 902654 | cpgIsland | CpG: 615 | length:8341, cpgNum:615, gcNum:5505, perCpg:14.7, perGc:66, obsExp:0.68, srow:20 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36494 | cellmeth_recounts | PrEC: 70, LNCaP: 151, DU145: 9 | |
36494 | cellmeth_diffreps_PrECvsDU145 | A=1293, B=48, Length=2460, Event=Down, log2FC=-4.75, padj=0 | |
36494 | cellmeth_diffreps_LNCaPvsDU145 | A=4225.93, B=95.41, Length=4980, Event=Down, log2FC=-5.47, padj=0 | |
36494 | cellexp | id=ENSG00000187961, name=KLHL17, PrEC=1221, str=1352, LNCaP=2587, str=1038, DU145=815, str=695 | |
36494 | tcgameth | site:cg03041482, B=0.89, L=0.89, H=0.88 | |
36494 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36494 | tcgaexp | gene=KLHL17, entrez=339451, pos=chr1:895967-901099(+), B=184, L=277, M=287, H=330 | |
36494 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |